CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g01340

Gene name ATCNGC10 (CYCLIC NUCLEOTIDE GATED CHANNEL 10)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.90 95.1 At1g01340 838832 ATCNGC10 (CYCLIC NUCLEOTIDE GATED CHANNEL 10) member of Cyclic nucleotide gated channel family S.X. H.G.
0.85 92.4 At1g70590 843396 F-box family protein F:binding;P:biological_process unknown;C:chloroplast;BOFMPV S.X. H.G.
0.81 90.4 At3g07020 819887 UDP-glucose:sterol glucosyltransferase (UGT80A2) F:transferase activity, transferring glycosyl groups;P:lipid glycosylation, carbohydrate metabolic process, metabolic process;C:plasma membrane, membrane;BMFPOV S.X. H.G.
0.81 90.4 At4g02730 828189 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFOPBAV S.X. H.G.
0.79 89.1 At4g31420 829269 zinc finger (C2H2 type) family protein F:transcription factor activity;P:regulation of transcription;C:intracellular;MFOP S.X. H.G.
0.79 89.1 At5g54280 835516 ATM2 (ARABIDOPSIS THALIANA MYOSIN 2) Type VII myosin gene S.X. H.G.
0.79 89.1 At4g32440 829379 agenet domain-containing protein F:RNA binding;P:biological_process unknown;C:unknown;P S.X. H.G.
0.77 88.0 At3g12140 820389 emsy N terminus domain-containing protein / ENT domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO S.X. H.G.
0.77 88.0 At5g05130 830395 SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein F:in 7 functions;P:unknown;C:unknown;MOBFPVA S.X. H.G.
0.76 87.4 At3g07400 819928 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;PFOMB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
357.5 100.0 E-ATMX-35-raw-cel-1574334832
351.2 100.0 E-ATMX-35-raw-cel-1574334816
216.2 100.0 E-ATMX-35-raw-cel-1574334800
210.2 100.0 GSM128661 Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
187.2 100.0 GSM128662 Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
53.0 99.8 E-MEXP-828-raw-cel-1156922572
52.3 99.8 E-MEXP-828-raw-cel-1156922368
50.7 99.8 E-MEXP-828-raw-cel-1156922342
37.4 99.7 E-MEXP-828-raw-cel-1156922613
34.2 99.7 E-MEXP-828-raw-cel-1156922905
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.67 0 751 At4g01010 826427 ATCNGC13 member of Cyclic nucleotide gated channel family C.G. S.X.
0.19 6e-33 143 At2g46430 819251 ATCNGC3 (CYCLIC NUCLEOTIDE GATED CHANNEL 3) cyclic nucleotide gated channel (CNGC4), downstream component of the signaling pathways leading to HR/resistance C.G. S.X.
0.10 8e-11 69 At2g46440 819252 ATCNGC11 (CYCLIC NUCLEOTIDE-GATED CHANNELS) Member of Cyclic nucleotide gated channel family. Positive regulator of resistance against avirulent fungal pathogen. C.G. S.X.
0.08 3e-10 67 At5g53130 835393 CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1) member of Cyclic nucleotide gated channel family C.G. S.X.
0.04 5e-6 54 At1g19780 838566 ATCNGC8 (CYCLIC NUCLEOTIDE GATED CHANNEL 8) member of Cyclic nucleotide gated channel family C.G. S.X.
0.06 3e-4 48 At2g46450 819253 ATCNGC12 Member of Cyclic nucleotide gated channel family.Positive regulator of resistance against avirulent fungal pathogen.Suppresses the phenotype conferred by cpr22 in a dosage-dependent manner. C.G. S.X.
0.05 2e-2 42 At4g30560 829179 ATCNGC9 (CYCLIC NUCLEOTIDE GATED CHANNEL 9) member of Cyclic nucleotide gated channel family C.G. S.X.
0.04 2e-2 42 At3g48010 823956 ATCNGC16 member of Cyclic nucleotide gated channel family C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 2e-3 46 Glycine max GmaAffx.51351.1.S1_at BQ297066 - - 7e-20 At5g53130 CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1) C.G. S.X.
0.05 2e-9 63 Hordeum vulgare Contig14052_at Contig14052 - - 4e-10 At5g53130 CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1) C.G. S.X.
0.05 6e-4 48 Oryza sativa Os02g0255000 AK112041.1 - Cyclic nucleotide-gated ion channel 1 (AtCNGC1)(Cyclic nucleotide-and calmodulin-regulated ion channel1) 2e-6 At3g48010 ATCNGC16 C.G. S.X.
0.19 2e-12 75 Populus trichocarpa PtpAffx.224250.1.S1_at pmrna42635 hypothetical protein - 1e-12 At1g01340 ATCNGC10 (CYCLIC NUCLEOTIDE GATED CHANNEL 10) C.G. S.X.
0.02 5e-3 44 Triticum aestivum TaAffx.77794.1.S1_at CA742726 - - 8e-11 At5g53130 CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1) C.G. S.X.
0.02 3e-1 36 Vitis vinifera 1615486_at CF415476 hypothetical protein LOC100245706 - 7e-3 At5g15410 DND1 (DEFENSE NO DEATH 1) C.G. S.X.
0.01 7e-3 42 Zea mays Zm.8828.1.A1_at BM075809 hypothetical protein LOC100191533 - 1e+0 At3g63095 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006811 The directed movement of charged atoms or small charged molecules into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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