CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g01320

Gene name tetratricopeptide repeat (TPR)-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g01320 839293 tetratricopeptide repeat (TPR)-containing protein F:binding;P:unknown;C:cellular_component unknown;MBFOPAV S.X. H.G.
0.75 86.9 At4g28080 828923 binding F:binding;P:unknown;C:unknown;MBFOPAV S.X. H.G.
0.19 12.7 At4g29060 829027 emb2726 (embryo defective 2726) F:RNA binding, translation elongation factor activity;P:embryonic development ending in seed dormancy, translational elongation, response to cadmium ion;C:chloroplast stroma, chloroplast, chloroplast envelope;BOMFPAV S.X. H.G.
0.14 6.8 At4g01800 827922 preprotein translocase secA subunit, putative F:protein binding, ATP binding;P:intracellular protein transport, protein targeting, protein import;C:chloroplast stroma, chloroplast, chloroplast envelope;OBPMA S.X. H.G.
0.04 0.9 At3g02450 821139 cell division protein ftsH, putative F:in 6 functions;P:unknown;C:integral to membrane, chloroplast;BOMFPAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.9 99.4 GSM133268 RIKEN-GODA5B-6 GSE5696 AtGenExpress: Effect of brassinosteroids in seedlings
13.8 99.4 GSM133260 RIKEN-GODA1B-6 GSE5696 AtGenExpress: Effect of brassinosteroids in seedlings
13.2 99.4 GSM133266 RIKEN-GODA4B-6 GSE5696 AtGenExpress: Effect of brassinosteroids in seedlings
13.1 99.4 GSM131471 ATGE_7_A2 GSE5629 AtGenExpress: Developmental series (seedlings and whole plants)
11.6 99.3 GSM131472 ATGE_7_B2 GSE5629 AtGenExpress: Developmental series (seedlings and whole plants)
10.8 99.2 GSM133272 RIKEN-GODA7B-6 GSE5696 AtGenExpress: Effect of brassinosteroids in seedlings
10.1 99.2 GSM133254 RIKEN-GODA11B-6 GSE5696 AtGenExpress: Effect of brassinosteroids in seedlings
10.1 99.2 GSM133276 RIKEN-GODA9B-6 GSE5696 AtGenExpress: Effect of brassinosteroids in seedlings
10.0 99.2 GSM133262 RIKEN-GODA2B-6 GSE5696 AtGenExpress: Effect of brassinosteroids in seedlings
9.9 99.1 E-TABM-21-raw-cel-529816282
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.11 3e-37 159 At4g28080 828923 binding F:binding;P:unknown;C:unknown;MBFOPAV C.G. S.X.
0.06 2e-19 99 At1g15290 838097 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MBOFPAV C.G. S.X.
0.00 2e-1 40 At5g17680 831634 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAV C.G. S.X.
0.01 2e-1 40 At2g05752 815125 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 2e-1 40 At1g78750 844211 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM C.G. S.X.
0.01 2e-1 40 At1g29000 839774 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:unknown;MOFBPVA C.G. S.X.
0.01 7e-1 38 At5g66660 836798 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO C.G. S.X.
0.01 7e-1 38 At4g00710 828025 BSK3 (BR-SIGNALING KINASE 3) Encodes BR-signaling kinase 3 (BSK3), one of the three homologous BR-signaling kinases (BSK1, AT4G35230; BSK2, AT5G46570; BSK3, AT4G00710). Mediates signal transduction from receptor kinase BRI1 by functioning as the substrate of BRI1. Plasma membrane localized. C.G. S.X.
0.01 7e-1 38 At4g00240 826673 PLDBETA2 member of C2-PLD subfamily C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e-3 46 Glycine max Gma.2348.1.S1_at BU551301 - - 1e-3 At1g01320 tetratricopeptide repeat (TPR)-containing protein C.G. S.X.
0.01 1e+0 36 Hordeum vulgare Contig3192_at Contig3192 - - 4e-22 At4g33865 40S ribosomal protein S29 (RPS29C) C.G. S.X.
0.16 2e-85 319 Oryza sativa OsAffx.24269.1.S1_at - - - 0 C.G. S.X.
0.21 1e-154 549 Populus trichocarpa PtpAffx.211611.1.S1_at pmrna22755 hypothetical protein - 1e-155 At1g01320 tetratricopeptide repeat (TPR)-containing protein C.G. S.X.
0.01 1e-5 54 Triticum aestivum Ta.20440.1.S1_at BQ238761 - - 2e-2 At1g15290 binding C.G. S.X.
0.04 1e-21 105 Vitis vinifera 1622650_at CD714725 - - 1e-71 At1g15290 binding C.G. S.X.
0.04 1e-9 65 Zea mays Zm.6108.2.S1_at CA399319 - - 5e-37 At1g15290 binding C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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