CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g01130

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.38 46.7 At1g01130 839359 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.43 55.3 At1g19830 838570 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO S.X. H.G.
0.36 43.6 At2g32765 817837 SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5) Encodes a small ubiquitin-like modifier (SUMO) protein that becomes covalently attached to various intracellular protein targets through an isopeptide bond. SUMOylation typically has a post-translational effect on the behavior of the target protein. S.X. H.G.
0.35 41.6 At4g30130 829136 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PMF S.X. H.G.
0.33 38.1 At1g75090 843846 methyladenine glycosylase family protein F:DNA-3-methyladenine glycosylase I activity, catalytic activity;P:DNA repair, base-excision repair;C:unknown;BOPAMF S.X. H.G.
0.29 30.3 At2g42800 818880 AtRLP29 (Receptor Like Protein 29) F:protein binding;P:unknown;C:anchored to membrane, plant-type cell wall;PMOBFA S.X. H.G.
0.20 14.4 At5g48480 834903 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPO S.X. H.G.
0.19 12.7 At1g44760 841040 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:unknown;PMO S.X. H.G.
0.10 3.4 At3g58770 825046 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
0.10 3.4 At3g53310 824499 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:endomembrane system;MBOFPV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
179.4 100.0 E-MEXP-682-raw-cel-922397628
145.9 99.9 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
102.9 99.9 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
96.1 99.9 GSM176879 AWP_Control_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
69.3 99.9 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
61.4 99.8 GSM133774 Lindsey_1-26_torpedo-meristem_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
60.7 99.8 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
60.7 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
56.1 99.8 GSM242962 Mock day 7 (day7E2) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
54.1 99.8 GSM131672 ATGE_48_C GSE5633 AtGenExpress: Developmental series (shoots and stems)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.53 9e-26 117 At5g47170 834763 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.08 1e-24 113 At1g01140 839349 CIPK9 (CBL-INTERACTING PROTEIN KINASE 9) Encodes a CBL-interacting protein kinase with similarity to SOS2 C.G. S.X.
0.03 3e-1 36 At4g12800 826892 PSAL (photosystem I subunit L) Encodes subunit L of photosystem I reaction center. C.G. S.X.
0.03 3e-1 36 At2g24310 816967 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPVA C.G. S.X.
0.02 1e+0 34 At4g35670 829719 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMVA C.G. S.X.
0.01 1e+0 34 At3g50590 824223 nucleotide binding F:nucleotide binding;P:biological_process unknown;C:plasma membrane;MBFOPV C.G. S.X.
0.01 4e+0 32 At5g64570 836578 XYL4 Encodes a beta-d-xylosidase that belongs to family 3 of glycoside hydrolases. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 6e+0 32 Glycine max HgAffx.19273.1.S1_at CA939907 - - 3e+0 At3g33187 - C.G. S.X.
0.03 5e-1 34 Hordeum vulgare Contig15824_at Contig15824 - - 1e+0 At1g01130 unknown protein C.G. S.X.
0.03 2e+0 34 Oryza sativa Os12g0227100 9640.m01209 - - 1e+0 At1g01130 unknown protein C.G. S.X.
0.03 6e+0 32 Populus trichocarpa PtpAffx.42507.1.S1_s_at CX176497 hypothetical protein - 2e-5 At3g44330 - C.G. S.X.
0.04 4e+0 32 Triticum aestivum TaAffx.28624.1.S1_at BJ303889 - - 1e+0 At2g22670 IAA8 C.G. S.X.
0.04 8e-2 36 Vitis vinifera 1614256_at CB002433 hypothetical protein LOC100253803 - 2e-1 At4g18620 - C.G. S.X.
0.04 7e+0 30 Zea mays Zm.3270.1.A1_at BE638734 - - 8e-1 At2g27315 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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