Gene omics information

Query gene ID	9507414_R_4264-4644_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	92.5	9507414_R_4264-4644_at	9507414_R_4264-4644	-	-	1e+1	At5g06320	NHL3	S.X.	H.G.	Please select
0.80	92.5	HV_CEa0014H05r2_at	HV_CEa0014H05r2	-	-	3e+0	At5g64850	unknown protein	S.X.	H.G.	Please select
0.67	84.7	HS05N06r_at	HS05N06r	-	-	9e-1	At1g79110	protein binding / zinc ion binding	S.X.	H.G.	Please select
0.61	78.7	Contig12986_at	Contig12986	-	-	7e-13	At3g28007	nodulin MtN3 family protein	S.X.	H.G.	Please select
0.60	77.3	Contig17900_at	Contig17900	-	-	6e+0	At4g05170	DNA binding / transcription factor	S.X.	H.G.	Please select
0.55	72.0	EBem04_SQ003_H15_at	EBem04_SQ003_H15	-	-	3e+0	At5g33806	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.9	97.1	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
4.6	96.8	GSM261025	ABA-Early-rep2	GSE10328	ABA experiment
4.0	96.0	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
3.9	95.8	GSM261026	ABA-Early-rep3	GSE10328	ABA experiment
3.8	95.7	GSM261040	Dicktoo-deacclimation-rep2	GSE10329	Low temperature stress in cv. Dicktoo
3.7	95.5	GSM161200	cold treatment rep1	GSE6993	Barley low temperature stress
3.7	95.5	GSM261051	Bonus Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.6	95.3	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
3.6	95.3	GSM160823	19% SWC rep1	GSE6990	Barley drought stress
3.5	95.1	GSM261057	Xantha b-12 Cotrol rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e-1	34	Contig26021_at	Contig26021	-	-	7e+0	At5g59350	unknown protein	C.G.	S.X.	Please select
0.04	1e+0	32	HB27E22r_at	HB27E22r	-	-	3e+0	At5g15265	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	EBro04_SQ002_E11_at	EBro04_SQ002_E11	-	-	5e+0	At4g19270	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	32	Contig12360_at	Contig12360	-	-	1e-8	At5g16880	VHS domain-containing protein / GAT domain-containing protein	C.G.	S.X.	Please select
0.01	6e+0	30	Contig1237_s_at	Contig1237	aquaporin	-	1e-30	At1g01620	PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C)	C.G.	S.X.	Please select
0.02	6e+0	30	Contig3614_at	Contig3614	-	-	5e-2	At5g38470	DNA repair protein RAD23, putative	C.G.	S.X.	Please select
0.01	6e+0	30	Contig9760_at	Contig9760	-	-	6e-2	At1g64620	Dof-type zinc finger domain-containing protein	C.G.	S.X.	Please select
0.05	6e+0	30	HB30J05r_at	HB30J05r	-	-	7e-1	At5g10480	PAS2 (PASTICCINO 2)	C.G.	S.X.	Please select
0.02	6e+0	30	AF108010_at	AF108010	-	-	4e+0	At5g40700	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+1	30	Arabidopsis thaliana	At5g06320	830520	NHL3	encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus, spermine and Pseudomonas syringae pv. tomato DC3000. The gene product is localized to the plasma membrane.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	PsAffx.C345000003_at	PsAffx.C345000003	-	-	4e+0	At1g68180	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	1e+0	34	Oryza sativa	Os06g0652300	BI812416	-	21556- 22494	4e-2	At1g62350	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.71	0	636	Populus trichocarpa	PtpAffx.222060.1.S1_at	pmrna39265	hypothetical protein	-	4e+0	At4g36410	UBC17 (UBIQUITIN-CONJUGATING ENZYME 17)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	8e-1	34	Triticum aestivum	TaAffx.28565.1.S1_at	CA658720	-	-	9e+0	At1g22590	MADS-box family protein	C.G.	S.X.	Please select
0.04	2e-1	34	Vitis vinifera	1607883_at	CB969241	hypothetical protein LOC100255480	-	5e+0	At5g49215	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	C.G.	S.X.	Please select
0.03	1e+0	32	Zea mays	Zm.136.1.S1_at	AB001385.1	Fd VI	-	3e+1	Atmg00540	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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