CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1622886_at

Gene name hypothetical protein LOC100252460

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1622886_at CB348288 hypothetical protein LOC100252460 - 3e-13 At1g52540 protein kinase, putative S.X. H.G.
0.36 50.7 1614534_at CF603286 hypothetical protein LOC100253600 - 3e-38 At4g15080 zinc finger (DHHC type) family protein S.X. H.G.
0.29 37.7 1612204_at CB921241 hypothetical protein LOC100256288 - 1e-47 At3g03110 XPO1B S.X. H.G.
0.11 11.3 1609877_at CF517839 hypothetical protein LOC100264670 - 2e-28 At2g26460 RED family protein S.X. H.G.
0.09 9.4 1618241_at CF513295 hypothetical protein LOC100252311 - 6e-28 At5g43130 TAF4 (TBP-ASSOCIATED FACTOR 4) S.X. H.G.
0.07 7.8 1616840_at CF608637 hypothetical protein LOC100255499 - 9e-15 At1g09140 SF2/ASF-like splicing modulator (SRP30) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.8 96.4 GSM436409 V. riparia (VR, PI588259) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.8 93.4 GSM436370 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.8 93.4 GSM287873 Green hard berry B9 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.6 92.5 GSM287869 Green hard berry C3 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.5 91.9 GSM436371 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM436347 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436348 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436346 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436412 V. riparia (VR, PI588259) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM287867 Green hard berry C1 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-2 38 1619160_s_at CF606870 hypothetical protein LOC100263310 - 9e-43 At4g23900 nucleoside diphosphate kinase 4 (NDK4) C.G. S.X.
0.03 3e-1 34 1622071_a_at CF413627 hypothetical protein LOC100250183 - 2e-23 At2g24200 cytosol aminopeptidase C.G. S.X.
0.02 3e-1 34 1619413_at CB344818 - - 7e-6 At1g64850 calcium-binding EF hand family protein C.G. S.X.
0.02 3e-1 34 1609920_at CD711951 hypothetical protein LOC100264144 - 4e-30 At5g19820 emb2734 (embryo defective 2734) C.G. S.X.
0.02 3e-1 34 1608201_at CF212665 hypothetical protein LOC100267448 - 6e-1 At4g02200 drought-responsive family protein C.G. S.X.
0.02 3e-1 34 1606923_s_at CB344818 hypothetical protein LOC100255239 - 7e-6 At1g64850 calcium-binding EF hand family protein C.G. S.X.
0.03 3e-1 34 1606466_at CF512311 hypothetical protein LOC100250341 - 1e-80 At1g79830 GC5 (golgin candidate 5) C.G. S.X.
0.03 1e+0 32 1619472_x_at CK138141.1 - - 1e-9 At1g65350 UBQ13 C.G. S.X.
0.00 1e+0 32 1617698_at BM436537 hypothetical protein LOC100259464 - 5e-23 At1g30910 molybdenum cofactor sulfurase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 3e-13 75 Arabidopsis thaliana At1g52540 841685 protein kinase, putative F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA - - - C.G. S.X.
0.03 4e-1 36 Glycine max GmaAffx.5689.2.S1_at BG316170 - - 1e+0 At2g16790 shikimate kinase family protein C.G. S.X.
0.04 2e+0 32 Hordeum vulgare HVSMEg0007B03f_at HVSMEg0007B03f autophagy protein 9 - 3e+0 At4g36060 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.09 3e-15 83 Oryza sativa Os02g0186500 AK068056.1 - Protein kinase-like protein 5e-2 At1g52540 protein kinase, putative C.G. S.X.
0.26 3e-51 202 Populus trichocarpa PtpAffx.200599.1.S1_s_at pmrna1182 hypothetical protein - 2e-19 At3g15890 protein kinase family protein C.G. S.X.
0.04 1e+0 34 Triticum aestivum TaAffx.81815.1.S1_at CA681588 - - 1e+0 At3g29375 XH domain-containing protein C.G. S.X.
0.06 1e-10 65 Zea mays Zm.6342.1.S1_at AW052791 - - 2e-13 At1g52540 protein kinase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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