Gene omics information

Query gene ID	1622881_x_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	93.6	1622881_x_at	CK136938.1	-	-	7e-5	At2g39770	CYT1 (CYTOKINESIS DEFECTIVE 1)	S.X.	H.G.	Please select
0.39	54.9	1616416_at	CB349840	hypothetical protein LOC100251243	-	7e+0	At3g43740	leucine-rich repeat family protein	S.X.	H.G.	Please select
0.37	51.7	1612900_at	CD797784	hypothetical protein LOC100259949	-	5e+0	At5g44585	unknown protein	S.X.	H.G.	Please select
0.37	51.7	1620387_at	CD719602	hypothetical protein LOC100260954	-	2e-30	At5g07290	AML4 (ARABIDOPSIS MEI2-LIKE 4)	S.X.	H.G.	Please select
0.37	51.7	1611427_x_at	CF202711.1	-	-	7e+0	At5g64810	WRKY51	S.X.	H.G.	Please select
0.32	43.1	1611218_at	CB912267	hypothetical LOC100261590	-	3e-1	At1g66360	C2 domain-containing protein	S.X.	H.G.	Please select
0.32	43.1	1613790_at	BQ799915	hypothetical protein LOC100258406	-	4e-88	At5g47780	GAUT4 (Galacturonosyltransferase 4)	S.X.	H.G.	Please select
0.31	41.3	1612087_at	CB339591	-	-	2e+0	At2g28140	unknown protein	S.X.	H.G.	Please select
0.28	37.7	1607490_at	CF214086	hypothetical protein LOC100258031	-	1e-5	At1g08340	rac GTPase activating protein, putative	S.X.	H.G.	Please select
0.26	32.0	1612421_at	CF213299	hypothetical protein LOC100262002	-	4e+0	At5g13080	WRKY75	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.8	99.5	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
7.9	99.3	GSM147738	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	67
4.5	97.5	GSM147726	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	55
4.5	97.5	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
4.5	97.5	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
4.4	97.3	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49
3.8	96.4	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
3.6	96.0	GSM147730	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	59
3.3	95.2	GSM147709	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	38
3.3	95.2	GSM147742	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	71

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.94	0	908	1616290_at	CK136938.1	-	-	7e-5	At2g39770	CYT1 (CYTOKINESIS DEFECTIVE 1)	C.G.	S.X.	Please select
0.83	4e-176	615	1615490_x_at	CK138118.1	-	-	3e-1	At3g55590	GDP-mannose pyrophosphorylase, putative	C.G.	S.X.	Please select
0.83	4e-176	615	1613541_at	CK138118.1	-	-	3e-1	At3g55590	GDP-mannose pyrophosphorylase, putative	C.G.	S.X.	Please select
0.43	2e-153	539	1622606_at	CB910226	GDP-D-mannose pyrophosphorylase	-	4e-157	At2g39770	CYT1 (CYTOKINESIS DEFECTIVE 1)	C.G.	S.X.	Please select
0.17	3e-4	44	1616897_at	CF202443.1	-	-	8e-1	At2g27490	ATCOAE	C.G.	S.X.	Please select
0.02	8e-2	36	1612380_at	CD798301	hypothetical LOC100241030	-	2e-145	Atmg00480	-	C.G.	S.X.	Please select
0.02	3e-1	34	1621900_s_at	CD798424	hypothetical protein LOC100246013	-	3e-49	At3g13224	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.02	3e-1	34	1620672_at	CF207554	hypothetical protein LOC100254089	-	4e-11	At3g54350	emb1967 (embryo defective 1967)	C.G.	S.X.	Please select
0.03	3e-1	34	1619176_at	CF519067	hypothetical protein LOC100262554	-	5e-61	At1g36730	eukaryotic translation initiation factor 5, putative / eIF-5, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	7e-5	48	Arabidopsis thaliana	At2g39770	818562	CYT1 (CYTOKINESIS DEFECTIVE 1)	Encodes a GDP-mannose pyrophosphorylase/ mannose-1-pyrophosphatase. This enzyme provides GDP-mannose, which is used for cell wall carbohydrate biosynthesis and protein glycosylation as well as for ascorbate (vitamin C) biosynthesis. Mutations in this gene confer hypersensitivity to NH4+.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.34	7e-18	91	Glycine max	GmaAffx.74155.1.S1_at	AW396307	-	-	6e-30	At2g39770	CYT1 (CYTOKINESIS DEFECTIVE 1)	C.G.	S.X.	Please select
0.08	1e-1	36	Hordeum vulgare	Contig7203_at	Contig7203	-	-	2e-7	At2g39770	CYT1 (CYTOKINESIS DEFECTIVE 1)	C.G.	S.X.	Please select
0.06	9e-6	52	Oryza sativa	Os03g0268400	AK121972.1	-	Mannose-1-phosphate guanyltransferase (EC2.7.7.13) (ATP-mannose-1- phosphate guanylyltransferase)(GDP-mannose pyrophosphorylase) (NDP- hexosepyrophosphorylase)	3e-28	At2g39770	CYT1 (CYTOKINESIS DEFECTIVE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.28	5e-19	95	Populus trichocarpa	PtpAffx.1734.1.A1_at	AJ776489	hypothetical protein	-	2e-36	At2g39770	CYT1 (CYTOKINESIS DEFECTIVE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	3e-1	36	Triticum aestivum	Ta.28546.1.A1_at	AL823373	-	-	8e-24	At2g39770	CYT1 (CYTOKINESIS DEFECTIVE 1)	C.G.	S.X.	Please select
0.14	5e-4	44	Zea mays	Zm.12513.1.A1_at	AW000088	hypothetical protein LOC100274471	-	4e-32	At2g39770	CYT1 (CYTOKINESIS DEFECTIVE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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