CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1622880_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.86 95.1 1622880_at CF404749 - - 2e-1 At3g15020 malate dehydrogenase (NAD), mitochondrial, putative S.X. H.G.
0.63 84.3 1610729_at CD798441 hypothetical protein LOC100257029 - 3e+0 At5g44020 acid phosphatase class B family protein S.X. H.G.
0.48 68.8 1616710_at CF515503 hypothetical protein LOC100248331 - 2e-8 At3g56370 leucine-rich repeat transmembrane protein kinase, putative S.X. H.G.
0.32 43.1 1619190_at CD720196 hypothetical protein LOC100254635 - 1e-7 At5g24760 alcohol dehydrogenase, putative S.X. H.G.
0.28 37.7 1607578_at CF415519 hypothetical protein LOC100247175 - 1e+0 At5g57000 unknown protein S.X. H.G.
0.28 37.7 1608211_at CD798213 hypothetical protein LOC100247578 - 6e+0 At3g55490 - S.X. H.G.
0.26 32.0 1611440_at CB978779 hypothetical protein LOC100257657 - 1e-8 At1g49840 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.3 99.2 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
6.4 98.9 GSM147728 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 57
5.6 98.4 GSM147727 Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation 56
5.6 98.4 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51
4.6 97.6 GSM147710 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 39
4.6 97.6 GSM147740 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 69
4.3 97.2 GSM147726 Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation 55
4.3 97.2 GSM147742 Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation 71
4.1 96.9 GSM147721 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 50
4.0 96.7 GSM436416 V. riparia (VR, PI588259) SD, 13h 7 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-1 34 1615350_at CB349701 - - 1e+0 At1g09415 NIMIN-3 (NIM1-INTERACTING 3) C.G. S.X.
0.03 3e-1 34 1608163_at CF415423 hypothetical protein LOC100249111 - 9e-5 At5g24360 IRE1-1 (INOSITOL REQUIRING 1-1) C.G. S.X.
0.03 1e+0 32 1620229_at CF202844.1 - - 5e+0 At4g27660 unknown protein C.G. S.X.
0.03 1e+0 32 1619027_at CA818485 - - 7e-2 At4g39250 ATRL1 (ARABIDOPSIS RAD-LIKE 1) C.G. S.X.
0.03 1e+0 32 1618614_at CF404904 hypothetical protein LOC100260667 - 2e-5 At5g62100 ATBAG2 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 2) C.G. S.X.
0.02 1e+0 32 1616171_at BM437490 hypothetical protein LOC100251471 - 3e-18 At5g48380 leucine-rich repeat family protein / protein kinase family protein C.G. S.X.
0.03 1e+0 32 1614997_at CF373599 - - 4e+0 At5g57000 unknown protein C.G. S.X.
0.03 1e+0 32 1607302_at CB979286 hypothetical protein LOC100253518 - 6e-3 At2g38450 - C.G. S.X.
0.02 5e+0 30 1622369_at CB342790 hypothetical protein LOC100262082 - 2e+0 At1g02335 GL22 (GERMIN-LIKE PROTEIN SUBFAMILY 2 MEMBER 2 PRECURSOR.) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-1 36 Arabidopsis thaliana At3g15020 820731 malate dehydrogenase (NAD), mitochondrial, putative F:in 6 functions;P:defense response to bacterium;C:mitochondrion, apoplast, membrane;BOMPFA - - - C.G. S.X.
0.10 2e-2 40 Glycine max GmaAffx.21787.1.A1_at AW348555 - - 6e-1 At5g07580 DNA binding / transcription factor C.G. S.X.
0.04 5e-1 34 Hordeum vulgare Contig19894_at Contig19894 - - 9e-1 At2g35640 hydroxyproline-rich glycoprotein family protein C.G. S.X.
Os02g0215300 0 Os03g0667200 Oryza sativa Os01g0964550 NM_189387.1 - - 1e+0 At5g27200 ACP5 (acyl carrier protein 5) C.G. S.X.
0.06 1e-13 77 Populus trichocarpa Ptp.1350.1.S1_at CK093316 hypothetical protein - 3e-2 At3g59350 serine/threonine protein kinase, putative C.G. S.X.
0.04 4e+0 32 Triticum aestivum TaAffx.31585.1.S1_at CA612461 - - 1e-1 At5g64813 LIP1 (Light Insensitive Period1) C.G. S.X.
0.03 7e+0 30 Zea mays ZmAffx.92.1.A1_at AI665387 - - 2e-1 At3g53890 40S ribosomal protein S21 (RPS21B) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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