CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1622862_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.58 79.8 1622862_at CB004075 - - 1e-38 Atcg00440 - S.X. H.G.
0.69 88.3 1619933_s_at CB974435 - - 2e+0 At2g18969 - S.X. H.G.
0.65 85.0 1614922_at CA816734 - - 2e-12 Atcg00050 - S.X. H.G.
0.61 83.2 1620059_x_at CF205803.1 - - 2e+0 At1g49470 unknown protein S.X. H.G.
0.60 81.9 1620781_at CB340195 - - 2e+0 At3g58680 MBF1B (MULTIPROTEIN BRIDGING FACTOR 1B) S.X. H.G.
0.59 80.6 1614408_at CB978599 - - 5e-25 Atcg01130 - S.X. H.G.
0.58 79.8 1618524_x_at CF202257.1 - - 7e+0 At3g57840 self-incompatibility protein-related S.X. H.G.
0.58 79.8 1618737_x_at CF202021.1 - - 1e+0 At4g09650 ATPD (ATP SYNTHASE DELTA-SUBUNIT GENE) S.X. H.G.
0.52 73.9 1614676_s_at BQ793152 ATP synthase subunit a, chloroplastic - 0 Atcg00120 - S.X. H.G.
0.52 73.9 1610347_s_at CF202826.1 similar to NADH dehydrogenase subunit I - 2e+0 At1g35430 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.5 99.6 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51
9.3 99.6 GSM147723 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 52
7.7 99.3 GSM147708 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 37
7.1 99.1 GSM147730 Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation 59
6.5 98.9 GSM147739 Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation 68
6.4 98.9 GSM147728 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 57
6.3 98.8 GSM322367 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
6.2 98.8 GSM147726 Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation 55
6.0 98.7 GSM322364 genotype: Chardonnay - disease type: Healthy - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
5.6 98.4 GSM147727 Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation 56
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 0 916 1620265_at BQ793093 - - 0 Atcg00480 - C.G. S.X.
0.87 0 916 1612005_s_at CB004075 - - 1e-38 Atcg00440 - C.G. S.X.
0.17 0 916 1610039_s_at CA817529 similar to NADH-plastoquinone oxidoreductase subunit K - 0 Atcg00480 - C.G. S.X.
0.02 1e-1 36 1609451_at CA818791 hypothetical protein LOC100265442 - 1e-13 At5g13800 hydrolase, alpha/beta fold family protein C.G. S.X.
0.03 2e+0 32 1621479_at CF206213.1 - - 1e+0 At4g16060 unknown protein C.G. S.X.
0.01 2e+0 32 1620978_at CF405834 hypothetical protein LOC100243157 - 3e-62 At2g03120 ATSPP (ARABIDOPSIS SIGNAL PEPTIDE PEPTIDASE) C.G. S.X.
0.01 2e+0 32 1614557_s_at CF405834 hypothetical protein LOC100243157 - 3e-62 At2g03120 ATSPP (ARABIDOPSIS SIGNAL PEPTIDE PEPTIDASE) C.G. S.X.
0.02 2e+0 32 1611202_at CF203579.1 - - 3e-39 At2g03120 ATSPP (ARABIDOPSIS SIGNAL PEPTIDE PEPTIDASE) C.G. S.X.
0.02 2e+0 32 1609592_at CD801043 hypothetical protein LOC100245785 - 5e-28 At1g68100 IAR1 (IAA-ALANINE RESISTANT 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 1e-38 161 Arabidopsis thaliana Atcg00440 - - Encodes NADH dehydrogenase D3 subunit of the chloroplast NAD(P)H dehydrogenase complex - - - C.G. S.X.
0.03 2e+0 34 Glycine max GmaAffx.61021.1.S1_at BU927027 - - 5e-2 At1g66090 disease resistance protein (TIR-NBS class), putative C.G. S.X.
0.03 3e+0 32 Hordeum vulgare HV_CEa0017M22f_at HV_CEa0017M22f - - 1e+1 At3g54300 ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727) C.G. S.X.
0.20 1e-33 145 Oryza sativa Os01g0749400 AK067731.1 - Glycosyl transferase, family 20 domain containingprotein 2e-12 At1g06410 ATTPS7 C.G. S.X.
0.20 1e-45 184 Populus trichocarpa PtpAffx.216449.1.S1_at pmrna31228 hypothetical protein - 6e-143 Atcg00440 - C.G. S.X.
0.04 2e+0 34 Triticum aestivum Ta.12475.1.A1_at BQ172425 - - 2e+0 At4g36560 unknown protein C.G. S.X.
0.20 3e-34 145 Zea mays ZmAffx.1460.1.S1_at 11990232-27 - - 4e-73 Atcg00440 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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