Gene omics information

Query gene ID	1622840_at
Gene name	hypothetical protein LOC100251026
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.84	94.8	1622840_at	CF213749	hypothetical protein LOC100251026	-	3e-39	At1g60780	HAP13 (HAPLESS 13)	S.X.	H.G.	Please select
0.63	84.3	1612324_s_at	CF514894	hypothetical protein LOC100261737	-	4e-122	At2g31610	40S ribosomal protein S3 (RPS3A)	S.X.	H.G.	Please select
0.61	83.2	1611402_at	CB340250	hypothetical protein LOC100243581	-	2e-21	At5g46430	60S ribosomal protein L32 (RPL32B)	S.X.	H.G.	Please select
0.36	50.7	1620354_at	CF372581	hypothetical protein LOC100261409	-	1e-15	At5g27770	60S ribosomal protein L22 (RPL22C)	S.X.	H.G.	Please select
0.32	43.1	1613599_a_at	BQ799080	hypothetical protein LOC100253770 /// hypothetical protein LOC100263573	-	5e-56	At4g16720	60S ribosomal protein L15 (RPL15A)	S.X.	H.G.	Please select
0.29	37.7	1611700_at	CF215728	hypothetical protein LOC100254168	-	2e-9	At3g59650	mitochondrial ribosomal protein L51/S25/CI-B8 family protein	S.X.	H.G.	Please select
0.21	24.0	1621039_s_at	CB973058	hypothetical protein LOC100251294	-	5e-57	At4g31700	RPS6 (RIBOSOMAL PROTEIN S6)	S.X.	H.G.	Please select
0.18	19.4	1607966_at	CD798713	hypothetical protein LOC100251385	-	8e+0	At5g05840	unknown protein	S.X.	H.G.	Please select
0.17	18.2	1608210_at	CF212773	hypothetical protein LOC100259736	-	1e-44	At1g70600	structural constituent of ribosome	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.7	96.2	GSM287891	Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.5	95.7	GSM287893	Pink soft berry C12 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.2	94.9	GSM287889	Pink soft berry B8 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.2	94.9	GSM436412	V. riparia (VR, PI588259) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM436399	V. riparia (VR, PI588259) LD, 15h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436426	V. riparia (VR, PI588259) SD, 13h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM287892	Pink soft berry C11 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.8	93.4	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e-10	65	1611526_at	CF604832	hypothetical protein LOC100251026	-	8e-51	At1g10730	clathrin adaptor complexes medium subunit family protein	C.G.	S.X.	Please select
0.01	6e-1	34	1618545_a_at	CB346750	hypothetical LOC100265979	-	2e-50	At1g12270	stress-inducible protein, putative	C.G.	S.X.	Please select
0.01	6e-1	34	1613154_at	CB346750	hypothetical LOC100265979	-	2e-50	At1g12270	stress-inducible protein, putative	C.G.	S.X.	Please select
0.02	6e-1	34	1611113_at	CF215815	hypothetical protein LOC100262993	-	8e-15	At4g06599	ubiquitin family protein	C.G.	S.X.	Please select
0.02	3e+0	32	1619315_s_at	CF212908	hypothetical protein LOC100246956	-	2e-21	At3g53020	STV1 (SHORT VALVE1)	C.G.	S.X.	Please select
0.02	3e+0	32	1618451_at	BQ793168	-	-	1e+0	At4g23650	CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)	C.G.	S.X.	Please select
0.02	3e+0	32	1615635_at	CB345135	-	-	4e-6	Atcg00080	-	C.G.	S.X.	Please select
0.01	3e+0	32	1614965_at	BQ792730	MADS-box protein 4	-	6e-36	At1g24260	SEP3 (SEPALLATA3)	C.G.	S.X.	Please select
0.01	3e+0	32	1613856_at	CD012158	hypothetical protein LOC100264793	-	4e-89	At1g31420	FEI1 (FEI 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.44	3e-39	163	Arabidopsis thaliana	At1g60780	842372	HAP13 (HAPLESS 13)	F:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:clathrin vesicle coat, clathrin adaptor complex;MFOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.47	2e-140	500	Glycine max	Gma.3839.1.S1_a_at	CD391787	-	-	2e-69	At1g60780	HAP13 (HAPLESS 13)	C.G.	S.X.	Please select
0.39	3e-96	351	Hordeum vulgare	Contig4159_at	Contig4159	-	-	2e-60	At1g60780	HAP13 (HAPLESS 13)	C.G.	S.X.	Please select
0.37	8e-91	335	Oryza sativa	Os01g0703600	AK065538.1	-	Mu1 adaptin	1e-67	At1g60780	HAP13 (HAPLESS 13)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.49	4e-166	585	Populus trichocarpa	Ptp.1758.1.A1_at	CV229748	hypothetical protein	-	5e-50	At1g60780	HAP13 (HAPLESS 13)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.35	2e-43	176	Triticum aestivum	Ta.1235.2.S1_a_at	CA596213	-	-	2e-29	At1g60780	HAP13 (HAPLESS 13)	C.G.	S.X.	Please select
0.29	1e-46	186	Zea mays	Zm.14288.1.A1_at	BM348960	-	-	1e-37	At1g60780	HAP13 (HAPLESS 13)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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