Gene omics information

Query gene ID	1622794_at
Gene name	hypothetical protein LOC100254649
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.76	91.5	1622794_at	CF211821	hypothetical protein LOC100254649	-	3e-6	At2g37200	integral membrane protein, putative	S.X.	H.G.	Please select
0.59	80.6	1609387_at	CB978426	similar to FIP2 (FH protein interacting protein 2); voltage-gated potassium channel	-	4e-48	At5g55000	FIP2	S.X.	H.G.	Please select
0.53	75.2	1610321_s_at	CB980394	hypothetical protein LOC100251531	-	9e-55	At1g64230	ubiquitin-conjugating enzyme, putative	S.X.	H.G.	Please select
0.52	73.9	1622694_at	CB979125	hypothetical protein LOC100245090	-	2e-28	At3g12760	-	S.X.	H.G.	Please select
0.50	72.7	1616039_at	CF215123	hypothetical protein LOC100248352	-	1e-20	At3g55440	TPI (TRIOSEPHOSPHATE ISOMERASE)	S.X.	H.G.	Please select
0.45	64.6	1620593_at	BQ797219	hypothetical protein LOC100252659	-	1e-97	At1g30580	GTP binding	S.X.	H.G.	Please select
0.41	58.7	1613287_at	BQ795475	-	-	1e-2	At1g76450	oxygen-evolving complex-related	S.X.	H.G.	Please select
0.40	57.7	1610875_at	BQ796874	similar to coatomer protein epsilon subunit family protein / COPE family protein	-	2e-68	At1g30630	coatomer protein epsilon subunit family protein / COPE family protein	S.X.	H.G.	Please select
0.38	53.6	1619361_at	CB982760	hypothetical protein LOC100260481	-	4e-9	At2g24050	MIF4G domain-containing protein / MA3 domain-containing protein	S.X.	H.G.	Please select
0.37	51.7	1616580_at	CF206767.1	hypothetical protein LOC100260322	-	2e+0	At2g28910	CXIP4 (CAX INTERACTING PROTEIN 4)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.6	97.6	GSM436427	V. riparia (VR, PI588259) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.4	97.3	GSM436428	V. riparia (VR, PI588259) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
4.0	96.7	GSM436424	V. riparia (VR, PI588259) SD, 13h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.9	96.6	GSM287899	Red soft berry C13 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.2	94.9	GSM287900	Red soft berry C15 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.1	94.6	GSM436429	V. riparia (VR, PI588259) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM287897	Red soft berry C29 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.9	93.8	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.9	93.8	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.8	93.4	GSM436408	V. riparia (VR, PI588259) LD, 15h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	1e-5	50	1621268_at	CB347163	hypothetical protein LOC100265522	-	2e-5	At2g37200	integral membrane protein, putative	C.G.	S.X.	Please select
0.01	8e-1	34	1620508_at	BQ797042	similar to cysteine protease Cp5	-	3e-2	At4g08330	unknown protein	C.G.	S.X.	Please select
0.02	8e-1	34	1608292_at	CA817093	hypothetical protein LOC100241035	-	7e-30	At5g57690	diacylglycerol kinase	C.G.	S.X.	Please select
0.01	3e+0	32	1619784_at	CF209299	hypothetical protein LOC100248174	-	2e-9	At5g23450	ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1)	C.G.	S.X.	Please select
0.02	3e+0	32	1619496_at	CF372656	hypothetical LOC100265165	-	1e-1	At4g17950	DNA-binding family protein	C.G.	S.X.	Please select
0.02	3e+0	32	1614065_at	CB914463	hypothetical protein LOC100258292	-	2e-1	At4g32340	-	C.G.	S.X.	Please select
0.01	3e+0	32	1613811_a_at	CB920849	VVTL1	-	5e-13	At1g07720	KCS3 (3-KETOACYL-COA SYNTHASE 3)	C.G.	S.X.	Please select
0.01	3e+0	32	1613353_at	CA809236	hypothetical protein LOC100265492	-	4e-86	At4g01370	ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4)	C.G.	S.X.	Please select
0.01	3e+0	32	1613408_at	CB347178	hypothetical protein LOC100244004	-	7e+0	At5g20110	dynein light chain, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	3e-6	54	Arabidopsis thaliana	At2g37200	818297	integral membrane protein, putative	F:molecular_function unknown;P:biological_process unknown;C:membrane;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.21	2e-48	194	Glycine max	Gma.4493.2.S1_at	AI495926	-	-	1e+0	At2g37200	integral membrane protein, putative	C.G.	S.X.	Please select
0.09	7e-18	91	Hordeum vulgare	Contig15506_at	Contig15506	-	-	6e+0	At3g28420	unknown protein	C.G.	S.X.	Please select
0.08	2e-21	105	Oryza sativa	Os10g0343200	AK108244.1	-	-	3e-2	At2g37200	integral membrane protein, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.08	3e-13	77	Populus trichocarpa	PtpAffx.43439.1.A1_at	CV277899	hypothetical protein	-	2e+0	At2g37200	integral membrane protein, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.10	1e-2	42	Triticum aestivum	TaAffx.57544.1.S1_at	CA627264	-	-	4e+0	At3g21890	zinc finger (B-box type) family protein	C.G.	S.X.	Please select
0.02	5e+0	32	Zea mays	Zm.4914.1.S1_at	CD437635	-	-	8e-4	At5g49330	AtMYB111 (myb domain protein 111)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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