CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1622793_at

Gene name hypothetical protein LOC100247146 /// hypothetical protein LOC100250759

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.9 1622793_at CB920514 hypothetical protein LOC100247146 /// hypothetical protein LOC100250759 - 3e-5 At2g17200 ubiquitin family protein S.X. H.G.
0.83 94.6 1614608_at CF212155 similar to protein transport protein Sec24, putative - 4e-10 At3g07100 protein transport protein Sec24, putative S.X. H.G.
0.61 83.2 1613126_at CF214395 hypothetical protein LOC100232876 - 5e-35 At5g41950 binding S.X. H.G.
0.55 77.3 1609317_at AF243474.1 ethylene receptor-like - 5e-102 At1g66340 ETR1 (ETHYLENE RESPONSE 1) S.X. H.G.
0.46 66.5 1620526_at BQ799509 hypothetical protein LOC100261578 - 1e-104 At1g54340 ICDH (ISOCITRATE DEHYDROGENASE) S.X. H.G.
0.21 24.0 1607415_at CB913224 hypothetical protein LOC100252123 - 9e-1 At2g01260 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2.5 91.9 GSM299462 D_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.3 90.7 GSM287903 Red soft berry A7 from plant 2 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.2 89.9 GSM436428 V. riparia (VR, PI588259) SD, 13h 42 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436397 V. riparia (VR, PI588259) LD, 15h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM299453 B_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.1 89.1 GSM287891 Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.1 89.1 GSM287902 Red soft berry C30 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.0 88.2 GSM287900 Red soft berry C15 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.0 88.2 GSM287889 Pink soft berry B8 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.0 88.2 GSM287893 Pink soft berry C12 from plant 1 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 1689 1610131_at CB920514 - - 3e-5 At2g17200 ubiquitin family protein C.G. S.X.
0.15 1e-14 79 1610676_at BQ794329 hypothetical protein LOC100267604 - 1e+0 At4g13360 catalytic C.G. S.X.
0.02 2e+0 32 1609233_at CF512410 hypothetical protein LOC100262574 - 6e+0 At5g65120 unknown protein C.G. S.X.
0.02 2e+0 32 1608360_at CB347529 hypothetical protein LOC100244623 - 3e-1 At5g66040 STR16 (SULFURTRANSFERASE PROTEIN 16) C.G. S.X.
0.01 2e+0 32 1607974_at CF213553 hypothetical protein LOC100266932 - 1e-30 At3g62870 60S ribosomal protein L7A (RPL7aB) C.G. S.X.
0.02 8e+0 30 1622333_at CD799818 hypothetical protein LOC100264006 - 6e-25 At2g47260 WRKY23 C.G. S.X.
0.02 8e+0 30 1622076_at CB348546 - - 3e-1 At2g27180 unknown protein C.G. S.X.
0.02 8e+0 30 1621514_at CB915597 - - 1e-1 At3g42800 unknown protein C.G. S.X.
0.01 8e+0 30 1620631_at CB339382 hypothetical protein LOC100255601 - 1e-63 At1g16700 NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 3e-5 50 Arabidopsis thaliana At2g17200 816225 ubiquitin family protein F:molecular_function unknown;P:protein modification process;C:unknown;MBOPFVA - - - C.G. S.X.
0.29 3e-24 113 Glycine max Gma.4335.1.S1_at BU548713 - - 8e-3 At2g17190 ubiquitin family protein C.G. S.X.
0.10 3e-3 42 Hordeum vulgare Contig8629_at Contig8629 - - 3e-6 At2g17190 ubiquitin family protein C.G. S.X.
0.05 2e-14 81 Oryza sativa Os03g0131300 AK100656.1 - Ubiquitin domain containing protein 5e-12 At2g17200 ubiquitin family protein C.G. S.X.
0.35 3e-15 83 Populus trichocarpa PtpAffx.160603.1.A1_at CV227293 hypothetical protein - 1e+0 At5g44390 FAD-binding domain-containing protein C.G. S.X.
0.11 2e-9 63 Triticum aestivum Ta.7608.3.A1_x_at BJ240481 - - 1e+0 At5g22791 - C.G. S.X.
0.12 2e-10 65 Zea mays ZmAffx.116.1.A1_at AI665610 - - 3e+0 At5g47700 60S acidic ribosomal protein P1 (RPP1C) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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