CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1622786_at

Gene name hypothetical protein LOC100246765

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.73 90.8 1622786_at CF207035.1 hypothetical protein LOC100246765 - 2e-8 At5g61210 SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33) S.X. H.G.
0.67 87.9 1613740_at BM436747 hypothetical protein LOC100248677 - 4e-63 At1g34370 STOP1 (sensitive to proton rhizotoxicity 1) S.X. H.G.
0.55 77.3 1617261_at CA811086 hypothetical protein LOC100242760 - 6e-1 At1g76800 nodulin, putative S.X. H.G.
0.50 72.7 1617496_s_at BQ797047 hypothetical protein LOC100247953 - 7e-25 At3g12570 FYD S.X. H.G.
0.36 50.7 1614078_at BQ799834 hypothetical protein LOC100254432 - 7e-31 At2g37570 SLT1 (sodium- and lithium-tolerant 1) S.X. H.G.
0.31 41.3 1610213_at BQ798061 similar to somatic embryogenesis receptor-like kinase 3 - 8e-11 At4g33430 BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.8 99.5 GSM299453 B_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.9 98.6 GSM299454 B_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.5 98.4 GSM436414 V. riparia (VR, PI588259) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
5.1 98.1 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
4.9 97.9 GSM299452 B_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.6 97.6 GSM299455 C_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.4 97.3 GSM299461 C_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.3 97.2 GSM299451 B_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.0 96.7 GSM299459 D_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.9 96.6 GSM299456 C_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.61 0 686 1613679_at BQ798757 - - 7e-5 At5g61210 SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33) C.G. S.X.
0.61 0 686 1611039_s_at BQ798757 hypothetical protein LOC100246765 - 7e-5 At5g61210 SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33) C.G. S.X.
0.02 1e-1 36 1620714_at CB969540 hypothetical protein LOC100259041 - 8e-19 At4g08950 EXO (EXORDIUM) C.G. S.X.
0.02 1e-1 36 1612939_at CF208053 - - 5e-1 At2g29995 unknown protein C.G. S.X.
0.02 2e+0 32 1620424_at CB349003 hypothetical protein LOC100255217 - 2e-3 At5g05270 chalcone-flavanone isomerase family protein C.G. S.X.
0.03 2e+0 32 1617971_at CB969434 - - 1e+0 At3g09800 protein binding C.G. S.X.
0.03 2e+0 32 1616710_at CF515503 hypothetical protein LOC100248331 - 2e-8 At3g56370 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.02 2e+0 32 1613776_at BQ796788 hypothetical LOC100254074 - 3e-9 At1g19850 MP (MONOPTEROS) C.G. S.X.
0.02 2e+0 32 1612326_at CB979483 hypothetical protein LOC100241773 - 7e-10 At3g20720 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 2e-8 59 Arabidopsis thaliana At5g61210 836242 SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33) membrane localized t-SNARE SNAP25 homologue, probably involved in cytokinesis and cell plate formation - - - C.G. S.X.
0.21 1e-4 48 Glycine max GmaAffx.92946.1.S1_at CF808671 - - 2e-5 At1g13890 SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30) C.G. S.X.
0.03 3e+0 32 Hordeum vulgare Contig18837_at Contig18837 - - 3e-4 At5g60020 LAC17 (laccase 17) C.G. S.X.
0.04 3e+0 34 Oryza sativa Os01g0393600 9629.m02871 - - 2e+0 At4g36750 quinone reductase family protein C.G. S.X.
0.10 8e-12 71 Populus trichocarpa PtpAffx.29726.1.A1_s_at CV249620 hypothetical protein - 1e-28 At1g13890 SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30) C.G. S.X.
0.03 5e+0 32 Triticum aestivum TaAffx.5367.1.S1_at CA713356 - - 4e+0 At5g42980 ATTRX3 (THIOREDOXIN 3) C.G. S.X.
0.03 2e+0 32 Zea mays Zm.9922.1.A1_at BM349085 - - 1e-3 At3g59060 PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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