Gene omics information

Query gene ID	1622784_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1622784_at	CK136882.1	-	-	4e+0	At2g20170	unknown protein	S.X.	H.G.	Please select
0.18	19.4	1607857_at	BQ798109	hypothetical protein LOC100261382	-	5e+0	At5g05650	-	S.X.	H.G.	Please select
0.13	13.3	1606986_at	CF201932.1	-	-	2e-31	At1g48830	40S ribosomal protein S7 (RPS7A)	S.X.	H.G.	Please select
0.11	11.3	1620836_at	BQ794337	hypothetical protein LOC100260803	-	1e-6	At1g32500	ATNAP6 (NON-INTRINSIC ABC PROTEIN 6)	S.X.	H.G.	Please select
0.06	6.8	1615792_x_at	CF202446.1	-	-	5e+0	At5g11260	HY5 (ELONGATED HYPOCOTYL 5)	S.X.	H.G.	Please select
0.01	2.1	1615958_at	CA816141	hypothetical protein LOC100244090	-	1e-23	At5g27640	TIF3B1 (TRANSLATION INITIATION FACTOR 3B1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.6	99.8	GSM436394	V. riparia (VR, PI588259) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
11.6	99.7	GSM147678	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	7
8.0	99.3	GSM147702	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation	31
7.7	99.3	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49
6.5	98.9	GSM147734	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	63
6.1	98.7	GSM436393	V. riparia (VR, PI588259) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
5.0	98.0	GSM147685	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	14
4.6	97.6	GSM436425	V. riparia (VR, PI588259) SD, 13h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
4.1	96.9	GSM436380	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.7	96.2	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.75	0	646	1617948_s_at	CB920313	hypothetical LOC100266696	-	1e+0	At5g42910	basic leucine zipper transcription factor (BZIP15)	C.G.	S.X.	Please select
0.03	1e+0	32	1620167_at	CB970524	hypothetical protein LOC100247740	-	1e+0	At2g20450	60S ribosomal protein L14 (RPL14A)	C.G.	S.X.	Please select
0.02	1e+0	32	1619441_at	CA809113	-	-	2e+0	At3g29270	ubiquitin-protein ligase	C.G.	S.X.	Please select
0.03	1e+0	32	1616086_at	CF515968	-	-	1e+0	At1g75870	unknown protein	C.G.	S.X.	Please select
0.04	1e+0	32	1613558_at	CD801773	-	-	3e+0	At5g52210	ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1)	C.G.	S.X.	Please select
0.02	5e+0	30	1620508_at	BQ797042	similar to cysteine protease Cp5	-	3e-2	At4g08330	unknown protein	C.G.	S.X.	Please select
0.03	5e+0	30	1620466_at	CB007446	hypothetical protein LOC100246357	-	7e-27	At5g56280	CSN6A	C.G.	S.X.	Please select
0.04	5e+0	30	1618374_at	CD007432	-	-	6e-5	At3g18500	-	C.G.	S.X.	Please select
0.03	5e+0	30	1617630_at	CF514753	hypothetical protein LOC100251032	-	3e-10	At3g52750	FTSZ2-2	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e+0	32	Arabidopsis thaliana	At2g20170	816537	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	GmaAffx.38528.2.A1_at	CA783092	-	-	3e+0	At5g27020	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Hordeum vulgare	HU10L19u_at	HU10L19u	-	-	4e+0	At5g60400	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	34	Oryza sativa	Os07g0526400	BI806666	-	Chalcone synthase (EC 2.3.1.74)(Naringenin-chalcone synthase)	4e+0	At3g21920	pollen coat receptor kinase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+0	34	Populus trichocarpa	PtpAffx.207697.1.S1_at	pmrna15275	hypothetical protein	-	8e+0	Atcg00790	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	4e+0	32	Triticum aestivum	Ta.843.2.S1_s_at	CA734935	-	-	8e+0	At4g33310	unknown protein	C.G.	S.X.	Please select
0.03	7e+0	30	Zea mays	ZmAffx.966.1.S1_at	AI677247	-	-	8e-1	At5g47830	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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