Gene omics information

Query gene ID	1622769_at
Gene name	hypothetical protein LOC100243302
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1622769_at	BQ793816	hypothetical protein LOC100243302	-	1e-22	At1g55520	TBP2 (TATA BINDING PROTEIN 2)	S.X.	H.G.	Please select
0.80	93.6	1611985_at	CF404643	hypothetical protein LOC100267021	-	2e-26	At5g15880	unknown protein	S.X.	H.G.	Please select
0.63	84.3	1622061_at	CD798716	hypothetical protein LOC100264484	-	3e-10	At1g59820	ALA3 (Aminophospholipid ATPase3)	S.X.	H.G.	Please select
0.61	83.2	1619247_at	CB971481	hypothetical protein LOC100256712	-	7e-11	At3g07300	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	S.X.	H.G.	Please select
0.50	72.7	1616079_at	CD801867	hypothetical LOC100255014	-	3e-21	At4g03340	glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein	S.X.	H.G.	Please select
0.29	37.7	1616860_at	BQ792203	hypothetical protein LOC100261021	-	4e-83	At3g59920	ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.4	91.3	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.2	89.9	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436379	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436382	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436359	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436381	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436363	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM147716	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	45
1.9	87.2	GSM436360	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436383	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e-1	34	1622697_at	CF404500	-	-	1e+0	At1g31160	zinc-binding protein, putative / protein kinase C inhibitor, putative	C.G.	S.X.	Please select
0.03	2e+0	32	1622615_at	CB975631	hypothetical protein LOC100248133	-	1e-6	At4g21130	EMB2271 (EMBRYO DEFECTIVE 2271)	C.G.	S.X.	Please select
0.02	2e+0	32	1619779_at	CA816807	hypothetical LOC100247281	-	4e-5	At1g57620	emp24/gp25L/p24 family protein	C.G.	S.X.	Please select
0.02	2e+0	32	1618899_at	CF206580.1	-	-	7e-18	At5g57040	lactoylglutathione lyase family protein / glyoxalase I family protein	C.G.	S.X.	Please select
0.02	2e+0	32	1617707_at	CF207480	hypothetical protein LOC100248444	-	2e-6	At5g61150	VIP4 (VERNALIZATION INDEPENDENCE 4)	C.G.	S.X.	Please select
0.02	2e+0	32	1615608_at	BQ792785	hypothetical protein LOC100248960 /// hypothetical protein LOC100255476	-	1e-22	At4g13050	acyl-(acyl carrier protein) thioesterase, putative / acyl-ACP thioesterase, putative / oleoyl-(acyl-carrier protein) hydrolase, putative / S-acyl fatty acid synthase thioesterase, putative	C.G.	S.X.	Please select
0.02	2e+0	32	1613252_at	BQ794813	hypothetical protein LOC100246860	-	1e-91	At4g38470	protein kinase family protein	C.G.	S.X.	Please select
0.02	2e+0	32	1613141_at	CF518362	hypothetical protein LOC100259242	-	2e-14	At2g43000	anac042 (Arabidopsis NAC domain containing protein 42)	C.G.	S.X.	Please select
0.03	2e+0	32	1612509_at	BQ792148	polygalacturonase	-	5e-6	At5g14650	polygalacturonase, putative / pectinase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.25	1e-22	107	Arabidopsis thaliana	At1g55520	841999	TBP2 (TATA BINDING PROTEIN 2)	TATA-box binding protein. Required for basal transcription. Acts facilitating the recruitment of TFIID to the promoter, which together with the RNA polymerase form the preinitiation complex.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.20	2e-22	107	Glycine max	Gma.4412.1.S1_x_at	L28002.1	TATA-box binding protein	-	4e-51	At1g55520	TBP2 (TATA BINDING PROTEIN 2)	C.G.	S.X.	Please select
0.23	9e-22	103	Hordeum vulgare	Contig19659_at	Contig19659	-	-	4e-19	At1g55520	TBP2 (TATA BINDING PROTEIN 2)	C.G.	S.X.	Please select
0.19	9e-25	115	Oryza sativa	Os12g0580300	AK102871.1	-	TATA-binding protein TBP2	3e-67	At1g55520	TBP2 (TATA BINDING PROTEIN 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.18	1e-41	171	Populus trichocarpa	PtpAffx.1988.2.A1_at	CV255867	global transcription factor group	-	1e-48	At1g55520	TBP2 (TATA BINDING PROTEIN 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.16	2e-18	93	Triticum aestivum	Ta.15.1.S1_at	CD453965	TATA binding protein (TFIID)	-	3e-27	At1g55520	TBP2 (TATA BINDING PROTEIN 2)	C.G.	S.X.	Please select
0.13	3e-21	101	Zea mays	Zm.93.1.A1_at	BM331772	TATA-binding protein1	-	6e-63	At1g55520	TBP2 (TATA BINDING PROTEIN 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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