Gene omics information

Query gene ID	1622760_at
Gene name	hypothetical protein LOC100266427
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	90.8	1622760_at	CD719223	hypothetical protein LOC100266427	-	1e+0	At3g61920	unknown protein	S.X.	H.G.	Please select
0.80	93.6	1620683_at	CA811381	hypothetical protein LOC100245630	-	8e-9	At4g26160	ACHT1 (ATYPICAL CYS HIS RICH THIOREDOXIN 1)	S.X.	H.G.	Please select
0.71	89.5	1619820_s_at	CA811381	hypothetical protein LOC100245630	-	8e-9	At4g26160	ACHT1 (ATYPICAL CYS HIS RICH THIOREDOXIN 1)	S.X.	H.G.	Please select
0.57	79.8	1608259_at	CF205412.1	hypothetical protein LOC100255358	-	2e-6	At5g59520	ZIP2	S.X.	H.G.	Please select
0.55	77.3	1617846_at	CF210020	hypothetical protein LOC100242395	-	2e-47	At3g57870	SCE1 (SUMO CONJUGATION ENZYME 1)	S.X.	H.G.	Please select
0.29	37.7	1608530_at	CB971070	hypothetical protein LOC100265997	-	2e-4	At5g64460	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.9	98.6	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.3	98.2	GSM147716	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	45
4.8	97.8	GSM299460	D_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.6	97.6	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.4	97.3	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.4	97.3	GSM147733	Vitis aestivalis 'Norton ' mock inoculateds at 4 h post inoculation	62
4.3	97.2	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
4.3	97.2	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
4.2	97.1	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.1	96.9	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.98	0	1332	1607956_at	CD719223	-	-	1e+0	At3g61920	unknown protein	C.G.	S.X.	Please select
0.16	7e-9	59	1612108_at	BQ800036	hypothetical protein LOC100248099	-	2e-1	At3g16330	unknown protein	C.G.	S.X.	Please select
0.04	3e-2	38	1620392_at	CF515457	hypothetical protein LOC100262927	-	2e-2	At1g30540	ATPase, BadF/BadG/BcrA/BcrD-type family	C.G.	S.X.	Please select
0.03	4e-1	34	1622744_at	CF201679.1	similar to Os01g0789500 /// similar to ribosomal protein S3	-	2e-42	Atcg00820	-	C.G.	S.X.	Please select
0.03	4e-1	34	1621951_at	BQ795175	hypothetical protein LOC100252259	-	3e-1	At5g38050	unknown protein	C.G.	S.X.	Please select
0.03	4e-1	34	1613911_s_at	CF201679.1	similar to Os01g0789500 /// similar to ribosomal protein S3	-	2e-42	Atcg00820	-	C.G.	S.X.	Please select
0.03	2e+0	32	1613115_at	CB973470	hypothetical protein LOC100266895	-	2e-1	At3g48540	cytidine/deoxycytidylate deaminase family protein	C.G.	S.X.	Please select
0.03	2e+0	32	1612629_at	CD715853	-	-	1e+1	At5g36910	THI2.2 (THIONIN 2.2)	C.G.	S.X.	Please select
0.03	2e+0	32	1608848_at	CD715853	-	-	1e+1	At5g36910	THI2.2 (THIONIN 2.2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At3g61920	825365	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	1e-1	38	Glycine max	GmaAffx.71032.1.S1_at	AW278168	-	-	3e+0	At5g30341	unknown protein	C.G.	S.X.	Please select
0.04	7e-1	34	Hordeum vulgare	HVSMEn0010H11f_at	HVSMEn0010H11f	-	-	2e+1	At4g06536	-	C.G.	S.X.	Please select
0.05	4e-2	40	Oryza sativa	OsAffx.15770.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	2e+0	34	Populus trichocarpa	PtpAffx.15379.1.S1_at	CV236306	hypothetical protein	-	1e-4	At3g16330	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e+0	34	Triticum aestivum	Ta.13221.1.S1_at	BQ166305	-	-	1e+0	At3g58180	PBS lyase HEAT-like repeat-containing protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zea mays	Zm.5877.1.A1_at	CA401399	-	-	2e+0	At5g24090	acidic endochitinase (CHIB1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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