Gene omics information

Query gene ID	1622717_s_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.94	99.3	1622717_s_at	CF606082	-	-	2e-1	At5g65590	Dof-type zinc finger domain-containing protein	S.X.	H.G.	Please select
0.30	39.4	1608129_at	CF372430	hypothetical protein LOC100265789	-	1e-87	At2g34480	60S ribosomal protein L18A (RPL18aB)	S.X.	H.G.	Please select
0.26	32.0	1610127_at	CB920325	-	-	1e-1	At3g15355	UBC25 (UBIQUITIN-CONJUGATING ENZYME 25)	S.X.	H.G.	Please select
0.26	32.0	1614482_at	CF206009.1	hypothetical protein LOC100241833	-	2e-21	At4g38130	HD1 (HISTONE DEACETYLASE 1)	S.X.	H.G.	Please select
0.25	30.5	1609966_a_at	BQ798735	hypothetical protein LOC100249980 /// hypothetical protein LOC100245503	-	3e-1	At3g01090	AKIN10 (Arabidopsis SNF1 kinase homolog 10)	S.X.	H.G.	Please select
0.24	28.7	1612131_at	CD797537	hypothetical protein LOC100263680	-	5e+0	Atcg01120	-	S.X.	H.G.	Please select
0.24	28.7	1609051_at	CA818195	-	-	4e-32	At5g47730	SEC14 cytosolic factor, putative / polyphosphoinositide-binding protein, putative	S.X.	H.G.	Please select
0.20	22.4	1616741_at	CB978754	hypothetical protein LOC100246939	-	5e-3	At1g56460	PAPA-1-like family protein / zinc finger (HIT type) family protein	S.X.	H.G.	Please select
0.20	22.4	1610828_at	CB974880	hypothetical protein LOC100252326	-	3e-5	At5g46750	AGD9 (ARF-GAP DOMAIN 9)	S.X.	H.G.	Please select
0.17	18.2	1622279_at	CF200642.1	-	-	3e+0	At5g50375	CPI1 (CYCLOPROPYL ISOMERASE)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.9	99.1	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
5.7	98.5	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
4.9	97.9	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
4.6	97.6	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.4	97.3	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
4.4	97.3	GSM436411	V. riparia (VR, PI588259) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.9	96.6	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.5	95.7	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.3	95.2	GSM436424	V. riparia (VR, PI588259) SD, 13h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.67	0	638	1608724_at	CF568791	-	-	1e+0	At3g50630	KRP2 (KIP-RELATED PROTEIN 2)	C.G.	S.X.	Please select
0.04	5e-3	40	1617488_at	CF210515	hypothetical protein LOC100256769	-	2e-1	At5g25090	plastocyanin-like domain-containing protein	C.G.	S.X.	Please select
0.06	7e-2	36	1618133_at	CF404967	hypothetical protein LOC100259114	-	2e-1	At5g28610	-	C.G.	S.X.	Please select
0.02	3e-1	34	1618935_at	CB340172	-	-	4e-1	At2g25052	unknown protein	C.G.	S.X.	Please select
0.03	3e-1	34	1617378_at	CB978610	hypothetical protein LOC100265457	-	7e-43	At5g13780	GCN5-related N-acetyltransferase, putative	C.G.	S.X.	Please select
0.02	3e-1	34	1609947_at	BQ798098	hypothetical protein LOC100262722	-	6e-22	At2g25310	carbohydrate binding	C.G.	S.X.	Please select
0.02	3e-1	34	1606502_at	BQ797201	hypothetical protein LOC100266630	-	2e-96	At3g10330	transcription initiation factor IIB-2 / general transcription factor TFIIB-2 (TFIIB2)	C.G.	S.X.	Please select
0.04	1e+0	32	1622206_at	CF510827	hypothetical protein LOC100255112	-	1e+1	At5g66440	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	1621834_at	BQ794561	hypothetical protein LOC100254175	-	2e-5	At3g02600	LPP3 (LIPID PHOSPHATE PHOSPHATASE 3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-1	36	Arabidopsis thaliana	At5g65590	836685	Dof-type zinc finger domain-containing protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:chloroplast;POF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	3e-1	36	Glycine max	GmaAffx.75596.1.S1_at	AW307212	-	-	7e-1	At5g42232	-	C.G.	S.X.	Please select
0.03	5e-1	34	Hordeum vulgare	HU12G03u_at	HU12G03u	-	-	1e+0	At3g60660	unknown protein	C.G.	S.X.	Please select
0.04	5e-1	36	Oryza sativa	Os05g0212000	9633.m01079	-	-	4e-2	At2g20613	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	9e-2	38	Populus trichocarpa	PtpAffx.213837.1.S1_at	pmrna27001	hypothetical protein	-	1e+0	At1g75770	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	1e+0	34	Triticum aestivum	Ta.15434.1.S1_at	CA484657	-	-	9e+0	At5g10890	myosin heavy chain-related	C.G.	S.X.	Please select
0.03	7e+0	30	Zea mays	Zm.9086.1.A1_at	AI649547	hypothetical protein LOC100280062	-	7e-2	At1g08160	harpin-induced protein-related / HIN1-related / harpin-responsive protein-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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