Gene omics information

Query gene ID	1622715_s_at
Gene name	hypothetical protein LOC100246378
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	93.6	1622715_s_at	CA809281	hypothetical protein LOC100246378	-	3e-68	At1g12900	GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2)	S.X.	H.G.	Please select
0.91	98.8	1620292_at	CA817018	hypothetical protein LOC100264686	-	3e-1	At2g45434	unknown protein	S.X.	H.G.	Please select
0.83	94.6	1617428_at	CB344473	hypothetical protein LOC100259814	-	7e-57	At1g42970	GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT)	S.X.	H.G.	Please select
0.67	87.9	1613773_s_at	BQ799145	hypothetical protein LOC100256361	-	3e-11	At2g30570	PSBW (PHOTOSYSTEM II REACTION CENTER W)	S.X.	H.G.	Please select
0.67	87.9	1614409_at	CA817387	hypothetical protein LOC100266036	-	1e-72	At3g61470	LHCA2	S.X.	H.G.	Please select
0.61	83.2	1613991_at	CF510955	hypothetical protein LOC100252545	-	5e-4	At1g67740	PSBY	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.0	98.0	GSM147684	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	13
4.9	97.9	GSM147706	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 24 h post inoculation	35
4.8	97.8	GSM147691	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 4 h post inoculation	20
4.8	97.8	GSM147688	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	17
4.6	97.6	GSM147702	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation	31
4.5	97.5	GSM147700	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 24 h post inoculation	29
4.5	97.5	GSM147685	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	14
4.4	97.3	GSM147697	Vitis vinifera 'Cabernet sauvignon' mock inoculateds at 4 h post inoculation	26
4.4	97.3	GSM147689	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	18
4.3	97.2	GSM147703	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 4 h post inoculation	32

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.20	3e-16	85	1617428_at	CB344473	hypothetical protein LOC100259814	-	7e-57	At1g42970	GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT)	C.G.	S.X.	Please select
0.02	1e-6	54	1608869_s_at	CF514065	glyceraldehyde-3-phosphate dehydrogenase	-	4e-41	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	C.G.	S.X.	Please select
0.02	1e-2	40	1622304_at	CF513613	hypothetical protein LOC100267709	-	2e+0	At2g19740	60S ribosomal protein L31 (RPL31A)	C.G.	S.X.	Please select
0.01	1e-2	40	1615814_at	CB920915	hypothetical protein LOC100264789	-	0	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	C.G.	S.X.	Please select
0.01	2e-1	36	1620946_a_at	CB348039	hypothetical protein LOC100246409	-	1e-9	At5g51430	EYE (EMBRYO YELLOW)	C.G.	S.X.	Please select
0.01	2e-1	36	1618348_at	CF373264	hypothetical protein LOC100265921	-	1e-47	At5g45750	AtRABA1c (Arabidopsis Rab GTPase homolog A1c)	C.G.	S.X.	Please select
0.02	2e-1	36	1617167_at	CB343765	hypothetical protein LOC100261236	-	3e-1	At3g43110	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	1616266_at	CF215736	hypothetical protein LOC100254522	-	4e-1	At3g44590	60S acidic ribosomal protein P2 (RPP2D)	C.G.	S.X.	Please select
0.02	2e-1	36	1612384_s_at	CF215736	-	-	4e-1	At3g44590	60S acidic ribosomal protein P2 (RPP2D)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.56	3e-68	260	Arabidopsis thaliana	At1g12900	837848	GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2)	F:NAD or NADH binding, glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, binding, glyceraldehyde-3-phosphate dehydrogenase activity, catalytic activity;P:glycolysis, glucose metabolic process, metabolic process;C:apoplast, chloroplast stroma, chloroplast, membrane, chloroplast envelope;BOPFMA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.47	1e-148	527	Glycine max	Gma.11037.1.S1_at	BG839382	glyceraldehyde-3-phosphate dehydrogenase A subunit	-	1e-104	At3g26650	GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT)	C.G.	S.X.	Please select
0.38	4e-50	198	Hordeum vulgare	Contig888_at	Contig888	-	-	9e-16	At3g26650	GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT)	C.G.	S.X.	Please select
0.31	2e-73	278	Oryza sativa	Os04g0459500	AK071685.1	-	GADPH (383 AA) (Fragment)	6e-11	At1g12900	GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.64	0	815	Populus trichocarpa	Ptp.2311.1.S1_at	CV236562	-	-	8e-75	At1g12900	GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.31	3e-53	210	Triticum aestivum	Ta.30808.1.S1_s_at	CK211832	-	-	4e-15	At3g26650	GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT)	C.G.	S.X.	Please select
0.38	2e-64	246	Zea mays	Zm.7.1.S1_at	AW787278	glyceraldehyde-3-phosphate dehydrogenase1	-	3e-9	At1g12900	GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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