Gene omics information

Query gene ID	1622687_at
Gene name	hypothetical protein LOC100258159
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1622687_at	CB344274	hypothetical protein LOC100258159	-	2e-6	At1g01190	CYP78A8	S.X.	H.G.	Please select
0.73	90.8	1618601_s_at	CF204146.1	-	-	8e-1	At3g26690	ATNUDX13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13)	S.X.	H.G.	Please select
0.60	81.9	1619322_at	CD715538	-	-	5e+0	At4g32030	unknown protein	S.X.	H.G.	Please select
0.55	77.3	1618755_at	CD718603	-	-	7e+0	At4g30220	RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F)	S.X.	H.G.	Please select
0.40	57.7	1622844_at	CF517237	-	-	5e+0	At5g06480	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	S.X.	H.G.	Please select
0.36	50.7	1621190_at	CB341294	-	-	0	Atcg01280	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
90.5	100.0	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
45.9	100.0	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
16.0	99.9	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
11.5	99.7	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
10.0	99.6	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
7.5	99.2	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
7.4	99.2	GSM322370	genotype: Incrocio Manzoni - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.3	95.2	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.3	95.2	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.0	94.2	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-1	36	1609519_at	CF603152	hypothetical protein LOC100259523	-	7e-5	At3g01820	adenylate kinase family protein	C.G.	S.X.	Please select
0.02	1e-1	36	1607007_at	CF516236	hypothetical protein LOC100243041	-	3e-2	At2g38450	-	C.G.	S.X.	Please select
0.02	5e-1	34	1616580_at	CF206767.1	hypothetical protein LOC100260322	-	2e+0	At2g28910	CXIP4 (CAX INTERACTING PROTEIN 4)	C.G.	S.X.	Please select
0.01	2e+0	32	1622490_at	CF208094	hypothetical protein LOC100262793	-	6e-1	At1g68490	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	1622546_at	CB968779	-	-	3e-17	At5g20840	phosphoinositide phosphatase family protein	C.G.	S.X.	Please select
0.02	2e+0	32	1622444_at	CF212366	hypothetical protein LOC100252217	-	1e+0	At2g18980	peroxidase, putative	C.G.	S.X.	Please select
0.02	2e+0	32	1620061_s_at	CF214288	-	-	2e-1	At5g50740	metal ion binding	C.G.	S.X.	Please select
0.01	2e+0	32	1620186_at	CF511359	-	-	7e-1	At5g65390	AGP7	C.G.	S.X.	Please select
0.02	2e+0	32	1619618_at	CD010416	-	-	5e+0	At5g42630	ATS (ABERRANT TESTA SHAPE)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	2e-6	54	Arabidopsis thaliana	At1g01190	839233	CYP78A8	member of CYP78A	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.23	3e-12	73	Glycine max	Gma.8218.1.S1_at	BM523279	-	-	3e-11	At3g61880	CYP78A9 (CYTOCHROME P450 78A9)	C.G.	S.X.	Please select
0.03	1e-2	40	Hordeum vulgare	HU13P05r_at	HU13P05r	-	-	1e+0	At3g61880	CYP78A9 (CYTOCHROME P450 78A9)	C.G.	S.X.	Please select
0.09	1e-9	65	Oryza sativa	Os09g0528700	9637.m03020	-	Cytochrome p450 (CYP78A9)	6e-7	At3g61880	CYP78A9 (CYTOCHROME P450 78A9)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.39	2e-32	141	Populus trichocarpa	PtpAffx.161644.1.S1_s_at	CK106473	cytochrome P450	-	6e-5	At2g46660	CYP78A6	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	2e-9	63	Triticum aestivum	TaAffx.19531.1.A1_x_at	CK208119	-	-	1e+0	At2g42750	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.03	1e-2	40	Zea mays	Zm.14042.1.A1_at	AY107425.1	-	-	2e+0	At3g42570	peroxidase-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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