CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1622670_s_at

Gene name hypothetical protein LOC100242012

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.9 1622670_s_at CF207059.1 hypothetical protein LOC100242012 - 1e+1 At5g05590 PAI2 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 2) S.X. H.G.
0.73 90.8 1609744_at CF203760.1 hypothetical protein LOC100240811 /// hypothetical protein LOC100263073 - 2e+0 At3g42630 pentatricopeptide (PPR) repeat-containing protein S.X. H.G.
0.63 84.3 1610363_at CB979583 hypothetical protein LOC100267452 - 9e-32 At3g62150 PGP21 (P-GLYCOPROTEIN 21) S.X. H.G.
0.53 75.2 1610600_at CA813949 hypothetical protein LOC100242774 /// hypothetical protein LOC100248732 /// hypothetical protein LOC100253829 - 3e-1 At3g08580 AAC1 (ADP/ATP CARRIER 1) S.X. H.G.
0.44 64.1 1609397_at CF512090 hypothetical protein LOC100248717 - 1e-35 At5g64300 ATGCH S.X. H.G.
0.36 50.7 1618355_at CB837772 - - 1e+0 At2g16750 protein kinase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
35.4 100.0 GSM299456 C_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
24.7 100.0 GSM299453 B_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
24.2 100.0 GSM299457 C_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
19.9 99.9 GSM299454 B_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
16.0 99.9 GSM299459 D_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
15.0 99.9 GSM299460 D_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
8.1 99.4 GSM299458 D_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.2 99.1 GSM147681 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 10
3.5 95.7 GSM299462 D_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.9 93.8 GSM299461 C_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 5e-2 36 1607220_at CF513372 hypothetical protein LOC100244846 - 4e-48 At5g01850 protein kinase, putative C.G. S.X.
0.03 7e-1 32 1621519_at CD721078 - - 5e+0 At5g05987 PRA1.A2 (PRENYLATED RAB ACCEPTOR 1.A2) C.G. S.X.
0.03 7e-1 32 1618901_at CF214125 - - 2e-21 At2g33770 PHO2 (PHOSPHATE 2) C.G. S.X.
0.03 7e-1 32 1608925_at CD721078 - - 5e+0 At5g05987 PRA1.A2 (PRENYLATED RAB ACCEPTOR 1.A2) C.G. S.X.
0.04 3e+0 30 1622852_at CB982747 - - 4e+0 At5g06790 unknown protein C.G. S.X.
0.04 3e+0 30 1622591_at CB981129 hypothetical protein LOC100253642 - 1e-3 At5g51480 SKS2 (SKU5 SIMILAR 2) C.G. S.X.
0.03 3e+0 30 1622356_s_at CA817661 hypothetical protein LOC100265799 - 6e-31 At5g53560 CB5-E (CYTOCHROME B5 ISOFORM E) C.G. S.X.
0.03 3e+0 30 1622117_at CF204223.1 - - 6e-34 At5g53560 CB5-E (CYTOCHROME B5 ISOFORM E) C.G. S.X.
0.01 3e+0 30 1620577_at BQ800051 hypothetical protein LOC100262487 - 2e-10 At5g42950 GYF domain-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+1 30 Arabidopsis thaliana At5g05590 830442 PAI2 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 2) Encodes phosphoribosylanthranilate isomerase which catalyzes the third step in the tryptophan biosynthetic pathway. - - - C.G. S.X.
0.04 4e+0 32 Glycine max GmaAffx.77584.1.S1_at BM891327 - - 2e-1 At3g09760 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.06 5e+0 30 Hordeum vulgare HVSMEm0008I05r2_at HVSMEm0008I05r2 - - 1e-1 At2g28190 CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) C.G. S.X.
0.05 5e+0 32 Oryza sativa OsAffx.32337.1.A1_at - - - 0 C.G. S.X.
0.04 9e-1 34 Populus trichocarpa PtpAffx.44065.1.A1_at CV246435 hypothetical protein - 4e+0 At3g61980 serine protease inhibitor, Kazal-type family protein C.G. S.X.
0.07 3e+0 32 Triticum aestivum TaAffx.70119.1.S1_at AJ609989 - - 4e+0 At4g19100 unknown protein C.G. S.X.
0.05 1e+0 32 Zea mays ZmAffx.477.1.A1_at AI677582 - - 8e-1 At5g51860 MADS-box protein (AGL72) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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