Gene omics information

Query gene ID	1622567_at
Gene name	hypothetical protein LOC100266603
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	79.8	1622567_at	CF516028	hypothetical protein LOC100266603	-	2e-20	At5g27490	integral membrane Yip1 family protein	S.X.	H.G.	Please select
0.60	81.9	1608277_at	CA816391	hypothetical protein LOC100249980	-	3e-75	At4g12230	esterase/lipase/thioesterase family protein	S.X.	H.G.	Please select
0.53	75.2	1606778_at	CF607072	hypothetical protein LOC100261953	-	6e-30	At3g56740	ubiquitin-associated (UBA)/TS-N domain-containing protein	S.X.	H.G.	Please select
0.46	66.5	1622000_s_at	CF604800	hypothetical protein LOC100242169	-	1e+0	At3g27329	-	S.X.	H.G.	Please select
0.46	66.5	1611102_at	CF603491	hypothetical protein LOC100259129	-	4e-22	At3g58730	vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD)	S.X.	H.G.	Please select
0.40	57.7	1621762_at	CF371697	hypothetical protein LOC100242812	-	6e-30	At3g55380	UBC14 (ubiquitin-conjugating enzyme 14)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.2	94.9	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.0	94.2	GSM287883	Green soft berry A23 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.9	93.8	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.9	93.8	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.8	93.4	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.8	93.4	GSM287895	Pink soft berry B13 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.8	93.4	GSM287887	Green soft berry C23 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.7	93.0	GSM287884	Green soft berry C7 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM287890	Pink soft berry C25 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.5	91.9	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-1	34	1616088_at	CB979585	-	-	1e-48	At5g58060	YKT61	C.G.	S.X.	Please select
0.02	3e-1	34	1615384_at	CB981375	hypothetical protein LOC100254141	-	7e-34	At5g08160	ATPK3	C.G.	S.X.	Please select
0.03	3e-1	34	1609942_at	CF210968	hypothetical protein LOC100262467	-	5e+0	At5g67580	TRB2	C.G.	S.X.	Please select
0.02	5e+0	30	1622465_s_at	BQ797465	hypothetical protein LOC100263186	-	3e-14	At3g16570	RALFL23 (ralf-like 23)	C.G.	S.X.	Please select
0.02	5e+0	30	1620802_at	CB976446	similar to putative pyruvate dehydrogenase E1 alpha subunit	-	3e-89	At1g01090	PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA)	C.G.	S.X.	Please select
0.02	5e+0	30	1620473_at	CB004313	-	-	1e+0	At3g05440	C2 domain-containing protein	C.G.	S.X.	Please select
0.02	5e+0	30	1619597_at	BQ797465	hypothetical protein LOC100263186	-	3e-14	At3g16570	RALFL23 (ralf-like 23)	C.G.	S.X.	Please select
0.03	5e+0	30	1615351_at	CD714201	-	-	5e+0	At3g18715	IDL4 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 4)	C.G.	S.X.	Please select
0.02	5e+0	30	1613048_at	CB002467	-	-	5e-1	At4g03140	binding / catalytic/ oxidoreductase	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.35	2e-20	99	Arabidopsis thaliana	At5g27490	832808	integral membrane Yip1 family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.39	8e-30	131	Glycine max	Gma.739.1.S1_at	BG882670	-	-	6e-15	At5g27490	integral membrane Yip1 family protein	C.G.	S.X.	Please select
0.04	5e-1	34	Hordeum vulgare	HVSMEb0014L17f_at	HVSMEb0014L17f	-	-	2e+0	At4g09800	RPS18C (S18 RIBOSOMAL PROTEIN)	C.G.	S.X.	Please select
0.04	5e-1	36	Oryza sativa	OsAffx.21172.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.55	4e-19	95	Populus trichocarpa	Ptp.5789.1.S1_at	AI162378	hypothetical protein	-	2e-11	At5g27490	integral membrane Yip1 family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	4e+0	32	Triticum aestivum	TaAffx.29269.1.S1_at	CA646663	-	-	7e-1	At2g13800	SERK5 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 5)	C.G.	S.X.	Please select
0.04	2e+0	32	Zea mays	Zm.6779.2.S1_a_at	AY107207.1	-	-	3e+0	At4g21460	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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