CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1622491_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.61 83.2 1622491_at CF516970 - - 2e+0 At2g02510 unknown protein S.X. H.G.
0.75 91.3 1611644_at CF405969 hypothetical protein LOC100264276 - 6e+0 At5g55650 unknown protein S.X. H.G.
0.63 84.3 1612837_at CA809572 hypothetical protein LOC100244093 - 3e-14 At5g57860 ubiquitin family protein S.X. H.G.
0.50 72.7 1617266_at CB920220 hypothetical protein LOC100262243 - 7e-16 At5g18200 UTP:galactose-1-phosphate uridylyltransferase/ ribose-5-phosphate adenylyltransferase S.X. H.G.
0.46 66.5 1607134_at BQ794051 hypothetical protein LOC100243531 - 2e+0 At3g51100 unknown protein S.X. H.G.
0.44 64.1 1606528_at CF511984 hypothetical protein LOC100241598 - 2e-8 At1g07480 transcription factor IIA large subunit / TFIIA large subunit (TFIIA-L) S.X. H.G.
0.40 57.7 1614992_at CF415269 hypothetical protein LOC100263906 - 1e-18 At1g16740 ribosomal protein L20 family protein S.X. H.G.
0.25 30.5 1614001_s_at BQ794951 hypothetical protein LOC100260862 - 2e-41 At3g22290 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2.4 91.3 GSM287901 Red soft berry C16 from plant 1 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.3 90.7 GSM287900 Red soft berry C15 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.3 90.7 GSM287903 Red soft berry A7 from plant 2 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.2 89.9 GSM322362 genotype: Chardonnay - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.2 89.9 GSM287902 Red soft berry C30 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.1 89.1 GSM147728 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 57
2.1 89.1 GSM147729 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 58
2.0 88.2 GSM287898 Red soft berry B14 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.0 88.2 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
2.0 88.2 GSM147741 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 70
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 1e-10 65 1613453_at CD802171 - - 3e+0 At5g59380 MBD6 C.G. S.X.
0.01 2e+0 32 1619955_at CF511247 hypothetical protein LOC100265296 - 1e-5 At3g15970 Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein C.G. S.X.
0.02 7e+0 30 1620791_at CD009215 - - 5e+0 Atmg00840 - C.G. S.X.
0.01 7e+0 30 1620253_at CB977519 hypothetical protein LOC100259757 - 0 At3g05530 RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A) C.G. S.X.
0.01 7e+0 30 1619852_s_at CF207182 hypothetical protein LOC100265737 - 4e-12 At4g14040 SBP2 (SELENIUM-BINDING PROTEIN 2) C.G. S.X.
0.02 7e+0 30 1618892_at CF200898.1 - - 2e-9 At3g23800 SBP3 (selenium-binding protein 3) C.G. S.X.
0.01 7e+0 30 1616688_s_at CB342776 - - 0 Atcg01050 - C.G. S.X.
0.02 7e+0 30 1614324_at CF213899 hypothetical protein LOC100242265 - 2e-1 At1g64405 unknown protein C.G. S.X.
0.02 7e+0 30 1613795_at BQ794671 hypothetical protein LOC100259254 - 6e-47 At5g52560 ATUSP (ARABIDOPSIS THALIANA UDP-SUGAR PYROPHOSPHORYLASE) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e+0 34 Arabidopsis thaliana At2g02510 814780 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, respiratory chain complex I;PF - - - C.G. S.X.
0.17 8e-28 125 Glycine max Gma.2987.1.S1_s_at CD393690 - - 2e-4 At2g02510 unknown protein C.G. S.X.
0.15 5e-11 67 Hordeum vulgare HC107F06_SK_x_at HC107F06_SK - - 8e-1 At5g45620 26S proteasome regulatory subunit, putative (RPN9) C.G. S.X.
0.17 2e-17 91 Oryza sativa Os02g0564200 AK059007.1 - - 1e+0 At3g33187 - C.G. S.X.
0.13 6e-13 75 Populus trichocarpa PtpAffx.53314.1.A1_at CV229793 hypothetical protein - 7e-2 At1g14450 unknown protein C.G. S.X.
0.17 1e-16 87 Triticum aestivum Ta.15681.1.S1_at CA486287 - - 2e-4 At2g02510 unknown protein C.G. S.X.
0.16 9e-22 103 Zea mays Zm.6475.1.A1_at CK347790 hypothetical protein LOC100277255 - 5e+0 At5g57400 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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