Gene omics information

Query gene ID	1622486_at
Gene name	hypothetical protein LOC100247768
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	90.8	1622486_at	CF510820	hypothetical protein LOC100247768	-	3e-13	At4g13520	SMAP1 (SMALL ACIDIC PROTEIN 1)	S.X.	H.G.	Please select
0.50	72.7	1616141_at	CB345889	hypothetical protein LOC100258923	-	3e-48	At3g05000	transport protein particle (TRAPP) component Bet3 family protein	S.X.	H.G.	Please select
0.40	57.7	1622738_at	CB342472	hypothetical protein LOC100243793	-	2e-28	At3g52300	ATPQ (ATP SYNTHASE D CHAIN, MITOCHONDRIAL)	S.X.	H.G.	Please select
0.38	53.6	1621785_at	CF213480	hypothetical protein LOC100242004	-	2e-101	At2g44610	RAB6A	S.X.	H.G.	Please select
0.33	45.7	1609082_at	BQ793687	hypothetical protein LOC100242522	-	8e-5	At5g10350	polyadenylate-binding protein family protein / PABP family protein	S.X.	H.G.	Please select
0.25	30.5	1619316_s_at	CB970236	hypothetical protein LOC100261243	-	3e-67	At2g02760	ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.9	93.8	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.4	91.3	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.2	89.9	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.0	88.2	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM287891	Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	6e-12	69	1608801_at	CF414687	-	-	2e+0	At4g30690	translation initiation factor 3 (IF-3) family protein	C.G.	S.X.	Please select
0.03	3e-1	34	1619885_at	CF202348.1	hypothetical protein LOC100249027	-	4e-15	At3g18130	RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C)	C.G.	S.X.	Please select
0.02	3e-1	34	1609059_at	CB007086	hypothetical protein LOC100250061	-	8e-84	At2g40290	eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative	C.G.	S.X.	Please select
0.03	3e-1	34	1608953_at	BQ797089	hypothetical protein LOC100249027	-	5e-19	At1g18080	ATARCA	C.G.	S.X.	Please select
0.03	3e-1	34	1608577_s_at	CF202348.1	hypothetical protein LOC100249027	-	4e-15	At3g18130	RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C)	C.G.	S.X.	Please select
0.02	1e+0	32	1619540_at	CF208875	hypothetical protein LOC100263170	-	1e-4	At5g54430	universal stress protein (USP) family protein	C.G.	S.X.	Please select
0.03	1e+0	32	1611915_at	BM438116	hypothetical protein LOC100257368	-	2e-15	At5g42620	metalloendopeptidase/ zinc ion binding	C.G.	S.X.	Please select
0.03	1e+0	32	1609833_at	CB341417	-	-	3e+0	At2g21385	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	1607263_at	CD797622	hypothetical protein LOC100257385 /// hypothetical protein LOC100265893	-	3e-4	At1g11905	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.16	3e-13	75	Arabidopsis thaliana	At4g13520	826984	SMAP1 (SMALL ACIDIC PROTEIN 1)	Encodes a small acid protein (SMAP1) that mediates responses Arabidopsis root to the synthetic auxin 2,4-Dichlorophenoxyacetic acid.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.23	2e-21	103	Glycine max	Gma.2944.1.S1_at	BM270186	-	-	4e-15	At4g13520	SMAP1 (SMALL ACIDIC PROTEIN 1)	C.G.	S.X.	Please select
0.04	2e+0	32	Hordeum vulgare	Contig15189_at	Contig15189	-	-	1e+0	At3g09032	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	34	Oryza sativa	OsAffx.12387.1.S1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.17	7e-15	81	Populus trichocarpa	Ptp.6150.1.S1_s_at	BU869632	hypothetical protein	-	3e-16	At4g13520	SMAP1 (SMALL ACIDIC PROTEIN 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e+0	34	Triticum aestivum	TaAffx.104685.1.S1_at	CA746225	-	-	9e-1	At5g24655	LSU4 (RESPONSE TO LOW SULFUR 4)	C.G.	S.X.	Please select
0.03	8e-3	40	Zea mays	Zm.4320.1.A1_at	BM079885	hypothetical protein LOC100276939	-	5e+0	At5g02502	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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