Gene omics information

Query gene ID	1622481_x_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1622481_x_at	CF568921	-	-	3e-2	At5g10430	AGP4 (ARABINOGALACTAN PROTEIN 4)	S.X.	H.G.	Please select
0.67	87.9	1615124_at	CF514122	hypothetical protein LOC100258563	-	8e-5	At1g71691	GDSL-motif lipase/hydrolase family protein	S.X.	H.G.	Please select
0.67	87.9	1619772_at	CF205273.1	hypothetical protein LOC100260458	-	2e+0	At3g05070	-	S.X.	H.G.	Please select
0.63	84.3	1615118_at	CF373171	hypothetical protein LOC100241584	-	1e+0	At4g36620	zinc finger (GATA type) family protein	S.X.	H.G.	Please select
0.61	83.2	1620954_at	CF513203	hypothetical protein LOC100242907	-	7e-2	At4g04900	RIC10 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 10)	S.X.	H.G.	Please select
0.40	57.7	1611748_s_at	CB969590	similar to PDF	-	1e-1	At2g42840	PDF1 (PROTODERMAL FACTOR 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.4	98.3	GSM436362	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
4.9	97.9	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
4.8	97.8	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
4.7	97.7	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
4.3	97.2	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.0	96.7	GSM436363	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
4.0	96.7	GSM436359	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.9	96.6	GSM436383	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.9	96.6	GSM436400	V. riparia (VR, PI588259) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.8	96.4	GSM436396	V. riparia (VR, PI588259) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.45	0	674	1617712_at	CK138139.1	-	-	4e-4	At2g14890	AGP9 (ARABINOGALACTAN PROTEIN 9)	C.G.	S.X.	Please select
0.45	0	674	1614517_x_at	CK138139.1	-	-	4e-4	At2g14890	AGP9 (ARABINOGALACTAN PROTEIN 9)	C.G.	S.X.	Please select
0.45	0	674	1609349_s_at	CK138139.1	hypothetical protein LOC100252521	-	4e-4	At2g14890	AGP9 (ARABINOGALACTAN PROTEIN 9)	C.G.	S.X.	Please select
0.23	2e-96	351	1616401_at	CF213677	hypothetical protein LOC100263582	-	4e-1	At5g07430	pectinesterase family protein	C.G.	S.X.	Please select
0.28	4e-91	333	1614190_at	CF207712	-	-	4e-1	At5g58090	glycosyl hydrolase family 17 protein	C.G.	S.X.	Please select
0.02	2e+0	32	1622094_at	CF515617	hypothetical protein LOC100242331	-	1e+0	At2g44000	-	C.G.	S.X.	Please select
0.02	2e+0	32	1621538_at	CA809611	hypothetical protein LOC100261262	-	4e-1	At2g43810	small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative	C.G.	S.X.	Please select
0.02	2e+0	32	1619573_at	CD721204	hypothetical protein LOC100250659	-	2e-3	At1g27730	STZ (salt tolerance zinc finger)	C.G.	S.X.	Please select
0.02	2e+0	32	1616204_at	CF201346.1	-	-	3e-4	At1g11840	ATGLX1 (GLYOXALASE I HOMOLOG)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	3e-2	40	Arabidopsis thaliana	At5g10430	830907	AGP4 (ARABINOGALACTAN PROTEIN 4)	Encodes arabinogalactan-protein (AGP4).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	4e-2	40	Glycine max	Gma.3594.2.S1_a_at	CD393884	-	-	7e-3	At2g14890	AGP9 (ARABINOGALACTAN PROTEIN 9)	C.G.	S.X.	Please select
0.02	3e+0	32	Hordeum vulgare	Contig6470_at	Contig6470	-	-	1e-3	At5g55290	ATP synthase subunit H family protein	C.G.	S.X.	Please select
0.03	2e-1	38	Oryza sativa	Os01g0511400	NM_193766.1	-	-	9e-2	At4g05070	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.11	1e-1	38	Populus trichocarpa	PtpAffx.4820.6.A1_at	CV251255	hypothetical protein	-	8e+0	At3g21970	receptor-like protein kinase-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e-1	38	Triticum aestivum	Ta.23753.3.S1_x_at	CA699040	-	-	4e+0	At3g28560	-	C.G.	S.X.	Please select
0.02	2e-1	36	Zea mays	Zm.703.1.A1_at	AY111840.1	-	-	1e-1	At1g18730	NDF6 (NDH DEPENDENT FLOW 6)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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