Gene omics information

Query gene ID	1622468_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	89.5	1622468_at	CF512400	-	-	4e-51	Atcg01120	-	S.X.	H.G.	Please select
0.55	77.3	1608000_at	CF517275	-	-	0	Atcg00270	-	S.X.	H.G.	Please select
0.31	41.3	1612887_at	BQ798901	-	-	7e-5	At3g04890	unknown protein	S.X.	H.G.	Please select
0.24	28.7	1622544_a_at	CD801877	hypothetical protein LOC100259887	-	9e-12	At5g57630	CIPK21 (CBL-interacting protein kinase 21)	S.X.	H.G.	Please select
0.12	12.1	1612005_s_at	CB004075	-	-	1e-38	Atcg00440	-	S.X.	H.G.	Please select
0.12	12.1	1609882_s_at	CF201079.1	-	-	1e-72	Atcg00670	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
26.7	100.0	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
8.4	99.4	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.6	99.3	GSM147726	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	55
5.8	98.6	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
5.0	98.0	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.5	97.5	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
4.4	97.3	GSM147712	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	41
3.9	96.6	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.8	96.4	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
3.7	96.2	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.28	0	672	1613371_s_at	CB340927	hypothetical LOC100251362	-	1e-32	Atcg01130	-	C.G.	S.X.	Please select
0.21	6e-180	630	1609479_s_at	CF204138.1	-	-	1e+0	At3g10590	myb family transcription factor	C.G.	S.X.	Please select
0.21	6e-180	630	1608495_at	CF204138.1	-	-	1e+0	At3g10590	myb family transcription factor	C.G.	S.X.	Please select
0.11	8e-65	248	1615642_at	CB345328	-	-	4e+0	At5g54740	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.04	8e-25	115	1620668_s_at	CF206489.1	-	-	2e-1	At3g60530	zinc finger (GATA type) family protein	C.G.	S.X.	Please select
0.03	1e-11	71	1611170_at	CB834329	-	-	1e+0	At1g68120	BPC3 (BASIC PENTACYSTEINE 3)	C.G.	S.X.	Please select
0.03	1e-11	71	1607355_at	CB834329	-	-	1e+0	At1g68120	BPC3 (BASIC PENTACYSTEINE 3)	C.G.	S.X.	Please select
0.01	6e-1	36	1618974_at	CF518903	hypothetical protein LOC100264692	-	9e-40	At5g11900	eukaryotic translation initiation factor SUI1 family protein	C.G.	S.X.	Please select
0.01	6e-1	36	1616217_at	CB003366	-	-	5e+0	At4g13830	J20 (DNAJ-LIKE 20)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	4e-51	204	Arabidopsis thaliana	Atcg01120	-	-	encodes a chloroplast ribosomal protein S15, a constituent of the small subunit of the ribosomal complex	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	4e-24	115	Glycine max	GmaAffx.87677.1.S1_at	BU080975	-	-	6e-11	Atcg01130	-	C.G.	S.X.	Please select
0.01	4e-3	44	Hordeum vulgare	HVSMEl0012A13f_at	HVSMEl0012A13f	-	-	2e-1	At3g60490	AP2 domain-containing transcription factor TINY, putative	C.G.	S.X.	Please select
0.07	9e-32	141	Oryza sativa	OsAffx.32220.1.A1_s_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.18	2e-59	232	Populus trichocarpa	PtpAffx.140059.1.A1_at	CV274261	-	-	1e-60	Atcg01120	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.09	1e-32	143	Triticum aestivum	TaAffx.128617.3.S1_x_at	CA631092	-	-	7e-40	Atcg01120	-	C.G.	S.X.	Please select
0.07	2e-32	141	Zea mays	ZmAffx.1333.1.S1_s_at	11990232-81	-	-	5e-50	Atcg01120	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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