Gene omics information

Query gene ID	1622451_s_at
Gene name	S-adenosyl-L-methionine decarboxylase
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.69	88.3	1622451_s_at	CB982889	S-adenosyl-L-methionine decarboxylase	-	8e-4	At5g15950	adenosylmethionine decarboxylase family protein	S.X.	H.G.	Please select
0.36	50.7	1617949_at	CF213069	hypothetical protein LOC100241470	-	1e-3	At3g09735	DNA-binding S1FA family protein	S.X.	H.G.	Please select
0.34	46.8	1615857_s_at	BQ797394	hypothetical protein LOC100267827	-	2e-53	At1g01820	PEX11C (PEROXIN 11C)	S.X.	H.G.	Please select
0.32	43.1	1620826_s_at	CB341136	hypothetical protein LOC100254009	-	3e-26	At4g08390	SAPX (STROMAL ASCORBATE PEROXIDASE)	S.X.	H.G.	Please select
0.32	43.1	1617060_s_at	CB977776	glutathione reductase (NADPH)	-	3e-84	At3g54660	GR (GLUTATHIONE REDUCTASE)	S.X.	H.G.	Please select
0.25	30.5	1615820_at	BQ796436	hypothetical protein LOC100263593	-	1e-6	At3g07270	GTP cyclohydrolase I	S.X.	H.G.	Please select
0.21	24.0	1620519_at	CF214639	similar to transcription factor /// hypothetical protein LOC100244736 /// hypothetical protein LOC100247112 /// hypothetical protein LOC100250564 /// hypothetical protein LOC100263253 /// hypothetical protein LOC100264237	-	8e-26	At2g38695	unknown protein	S.X.	H.G.	Please select
0.20	22.4	1608138_s_at	CB342671	-	-	0	Atcg00120	-	S.X.	H.G.	Please select
0.19	20.9	1614796_at	CF609955	hypothetical protein LOC100250729	-	4e-19	At1g42960	-	S.X.	H.G.	Please select
0.19	20.9	1609958_at	BQ800106	similar to PPX2 (protein phosphatase x-2); protein serine/threonine phosphatase	-	1e+0	At1g04040	acid phosphatase class B family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.1	96.9	GSM147683	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	12
3.9	96.6	GSM147677	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	6
3.7	96.2	GSM147701	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation	30
3.5	95.7	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.3	95.2	GSM147694	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 24 h post inoculation	23
3.2	94.9	GSM147700	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 24 h post inoculation	29
3.2	94.9	GSM147682	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	11
3.2	94.9	GSM147695	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation	24
3.1	94.6	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.35	8e-60	230	1612196_at	BQ799110	hypothetical protein LOC100254666	-	2e-14	At3g25570	adenosylmethionine decarboxylase family protein	C.G.	S.X.	Please select
0.10	5e-27	121	1611255_s_at	CF205309.1	S-adenosyl-L-methionine decarboxylase	-	4e+0	At2g25080	ATGPX1 (GLUTATHIONE PEROXIDASE 1)	C.G.	S.X.	Please select
0.06	1e-2	40	1615818_at	CD010936	-	-	1e+0	At3g58700	60S ribosomal protein L11 (RPL11B)	C.G.	S.X.	Please select
0.06	1e-2	40	1612003_at	CD010936	hypothetical protein LOC100241620	-	1e+0	At3g58700	60S ribosomal protein L11 (RPL11B)	C.G.	S.X.	Please select
0.01	9e-1	34	1611389_at	BG273763	isoflavone reductase-like protein 6	-	8e-13	At1g75280	isoflavone reductase, putative	C.G.	S.X.	Please select
0.02	9e-1	34	1609241_at	CF414695	similar to T23E18.17	-	8e-1	At3g46613	RTFL4 (ROTUNDIFOLIA LIKE 4)	C.G.	S.X.	Please select
0.01	4e+0	32	1622468_at	CF512400	-	-	4e-51	Atcg01120	-	C.G.	S.X.	Please select
0.02	4e+0	32	1622250_at	CD721386	-	-	1e+0	At4g16780	ATHB-2 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2)	C.G.	S.X.	Please select
0.01	4e+0	32	1622001_at	BQ799859	hypothetical protein LOC100248577	-	4e+0	At5g38290	peptidyl-tRNA hydrolase family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	8e-4	46	Arabidopsis thaliana	At5g15950	831452	adenosylmethionine decarboxylase family protein	F:adenosylmethionine decarboxylase activity;P:spermidine biosynthetic process, spermine biosynthetic process, polyamine biosynthetic process;C:cellular_component unknown;PMFOB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.24	9e-20	99	Glycine max	Gma.4295.2.S1_at	BU082959	-	-	7e-17	At3g25570	adenosylmethionine decarboxylase family protein	C.G.	S.X.	Please select
0.03	2e-2	40	Hordeum vulgare	Contig925_s_at	Contig925	-	-	2e-6	At3g02470	SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE)	C.G.	S.X.	Please select
0.09	1e-7	59	Oryza sativa	Os09g0424300	AK102445.1	-	S-adenosylmethionine decarboxylase	8e-14	At3g02468	CPuORF9 (Conserved peptide upstream open reading frame 9)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.32	4e-40	167	Populus trichocarpa	PtpAffx.1286.1.S1_s_at	CA924928	hypothetical protein	-	6e-5	At5g15950	adenosylmethionine decarboxylase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	2e-7	57	Triticum aestivum	TaAffx.118960.1.S1_s_at	BJ249152	-	-	2e-8	At5g15948	CPuORF10 (Conserved peptide upstream open reading frame 10)	C.G.	S.X.	Please select
0.08	2e-9	63	Zea mays	Zm.5534.1.S1_at	CF024200	S-adenosylmethionine decarboxylase proenzyme	-	7e-8	At3g02470	SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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