Gene omics information

Query gene ID	1622416_at
Gene name	hypothetical protein LOC100261985
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	87.9	1622416_at	CF518913	hypothetical protein LOC100261985	-	9e-2	At5g01870	lipid transfer protein, putative	S.X.	H.G.	Please select
0.73	90.8	1613022_s_at	CF569215.1	hypothetical protein LOC100261985	-	3e+0	At5g28310	oxidoreductase-related	S.X.	H.G.	Please select
0.71	89.5	1619614_at	CF372273	hypothetical protein LOC100249831	-	2e-36	At3g14350	SRF7 (STRUBBELIG-RECEPTOR FAMILY 7)	S.X.	H.G.	Please select
0.40	57.7	1606646_at	CA812296	hypothetical protein LOC100264115	-	2e-23	At5g09870	CESA5 (CELLULOSE SYNTHASE 5)	S.X.	H.G.	Please select
0.17	18.2	1622512_at	CF208965	hypothetical protein LOC100260682	-	4e-27	At4g38430	ROPGEF1	S.X.	H.G.	Please select
0.15	15.6	1611678_at	CF512915	hypothetical protein LOC100245914	-	2e-3	At1g56580	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.5	91.9	GSM436400	V. riparia (VR, PI588259) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436391	V. riparia (VR, PI588259) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436396	V. riparia (VR, PI588259) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436413	V. riparia (VR, PI588259) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436392	V. riparia (VR, PI588259) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436423	V. riparia (VR, PI588259) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436394	V. riparia (VR, PI588259) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436405	V. riparia (VR, PI588259) LD, 15h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436408	V. riparia (VR, PI588259) LD, 15h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.18	7e-37	153	1615807_at	CF569215.1	-	-	3e+0	At5g28310	oxidoreductase-related	C.G.	S.X.	Please select
0.18	7e-37	153	1613022_s_at	CF569215.1	hypothetical protein LOC100261985	-	3e+0	At5g28310	oxidoreductase-related	C.G.	S.X.	Please select
0.48	2e-34	145	1616398_at	CF972325.1	-	-	3e-1	At1g26310	CAL (CAULIFLOWER)	C.G.	S.X.	Please select
0.05	1e-7	56	1622231_at	AF467945.1	lipid transfer protein	-	2e+0	At5g01870	lipid transfer protein, putative	C.G.	S.X.	Please select
0.04	1e-7	56	1620454_s_at	AF467946.1	lipid transfer protein	-	2e+0	At5g01870	lipid transfer protein, putative	C.G.	S.X.	Please select
0.07	1e-7	56	1617032_s_at	AF465408.1	lipid transfer protein /// lipid transfer protein	-	9e-1	At5g01870	lipid transfer protein, putative	C.G.	S.X.	Please select
0.04	1e-7	56	1614363_at	AF467946.1	lipid transfer protein	-	2e+0	At5g01870	lipid transfer protein, putative	C.G.	S.X.	Please select
0.05	1e-7	56	1609281_s_at	AF467945.1	lipid transfer protein	-	2e+0	At5g01870	lipid transfer protein, putative	C.G.	S.X.	Please select
0.03	1e-1	36	1621598_at	CB348699	hypothetical protein LOC100255458 /// hypothetical protein LOC100240828 /// hypothetical protein LOC100252809	-	9e-2	At1g36390	co-chaperone grpE family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	9e-2	38	Arabidopsis thaliana	At5g01870	831705	lipid transfer protein, putative	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	2e-15	83	Glycine max	Gma.1096.1.S1_at	CD407195	-	-	4e-4	At5g59310	LTP4 (LIPID TRANSFER PROTEIN 4)	C.G.	S.X.	Please select
0.03	7e-1	34	Hordeum vulgare	Contig19403_at	Contig19403	-	-	3e+0	At2g16860	GCIP-interacting family protein	C.G.	S.X.	Please select
0.03	3e+0	34	Oryza sativa	OsAffx.19119.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	1e-4	48	Populus trichocarpa	PtpAffx.25004.4.S1_a_at	CV237911	hypothetical protein	-	1e-3	At5g01870	lipid transfer protein, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	2e+0	34	Triticum aestivum	Ta.21750.1.S1_x_at	CA700361	-	-	1e+1	At3g42473	LCR47 (Low-molecular-weight cysteine-rich 47)	C.G.	S.X.	Please select
0.03	1e+1	30	Zea mays	ZmAffx.886.1.A1_at	AI770831	-	-	8e-1	At5g22220	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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