Gene omics information

Query gene ID	1622399_at
Gene name	similar to DNA-binding protein
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1622399_at	CF206628.1	similar to DNA-binding protein	-	2e-27	At4g31550	WRKY11	S.X.	H.G.	Please select
0.83	94.6	1609171_at	CA813062	hypothetical protein LOC100251782	-	2e-2	At1g07530	SCL14 (SCARECROW-LIKE 14)	S.X.	H.G.	Please select
0.67	87.9	1609265_at	CD800725	hypothetical protein LOC100255460	-	5e-2	At3g60530	zinc finger (GATA type) family protein	S.X.	H.G.	Please select
0.67	87.9	1610064_at	CB341653	similar to DNA-binding protein	-	3e-19	At2g38470	WRKY33	S.X.	H.G.	Please select
0.67	87.9	1611285_s_at	CA809190	similar to DNA-binding protein	-	3e-22	At4g31550	WRKY11	S.X.	H.G.	Please select
0.55	77.3	1619985_at	CD004602	hypothetical protein LOC100262198	-	3e-1	At1g07530	SCL14 (SCARECROW-LIKE 14)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.9	99.8	GSM436351	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
6.8	99.0	GSM436370	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
6.3	98.8	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
6.1	98.7	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
5.4	98.3	GSM436413	V. riparia (VR, PI588259) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
4.8	97.8	GSM436350	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
4.0	96.7	GSM436393	V. riparia (VR, PI588259) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.5	95.7	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
3.1	94.6	GSM436391	V. riparia (VR, PI588259) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.69	0	747	1611285_s_at	CA809190	similar to DNA-binding protein	-	3e-22	At4g31550	WRKY11	C.G.	S.X.	Please select
0.15	3e-8	57	1611650_at	CA808599	hypothetical protein LOC100244122	-	3e-26	At2g23320	WRKY15	C.G.	S.X.	Please select
0.04	7e-3	40	1606659_s_at	CF210179	hypothetical protein LOC100244564	-	2e-19	At1g29280	WRKY65	C.G.	S.X.	Please select
0.03	3e-2	38	1612237_at	BQ795624	-	-	8e-11	At4g24240	WRKY7	C.G.	S.X.	Please select
0.03	1e-1	36	1610138_at	CF404355	hypothetical protein LOC100267148	-	3e-13	At4g27460	CBS domain-containing protein	C.G.	S.X.	Please select
0.03	2e+0	32	1620986_at	CF372684	-	-	2e-2	At2g31957	LCR75 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 75)	C.G.	S.X.	Please select
0.07	2e+0	32	1612649_s_at	CA809370	hypothetical protein LOC100244122	-	1e-6	At3g04670	WRKY39	C.G.	S.X.	Please select
0.03	7e+0	30	1621696_at	CD800064	hypothetical protein LOC100243296	-	9e+0	At5g44720	molybdenum cofactor sulfurase family protein	C.G.	S.X.	Please select
0.02	7e+0	30	1619861_s_at	CB835414	similar to putative protein	-	1e+0	At1g70270	ATP binding / DNA binding	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.24	2e-27	123	Arabidopsis thaliana	At4g31550	829282	WRKY11	member of WRKY Transcription Factor; Group II-d; negative regulator of basal resistance to Pseudomonas syringae.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.31	1e-38	161	Glycine max	GmaAffx.91989.1.S1_at	CF807714	-	-	3e-16	At2g24570	WRKY17	C.G.	S.X.	Please select
0.23	7e-35	147	Hordeum vulgare	Contig7798_at	Contig7798	-	-	7e-13	At4g31550	WRKY11	C.G.	S.X.	Please select
0.24	1e-45	184	Oryza sativa	Os04g0605100	AK072938.1	-	WRKY transcription factor 68	7e-22	At4g31550	WRKY11	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.21	6e-13	75	Populus trichocarpa	PtpAffx.112081.1.S1_at	BU891525	hypothetical protein	-	3e-16	At4g31550	WRKY11	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.13	3e-8	59	Triticum aestivum	TaAffx.107625.1.S1_at	CA697293	-	-	4e+0	At4g24240	WRKY7	C.G.	S.X.	Please select
0.23	4e-39	161	Zea mays	Zm.4272.1.S1_at	AI834123	hypothetical protein LOC100273049	-	7e-16	At4g31550	WRKY11	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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