Gene omics information

Query gene ID	1622386_at
Gene name	hypothetical protein LOC100264172
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.92	99.0	1622386_at	BQ794629	hypothetical protein LOC100264172	-	9e-3	At5g44210	ERF9 (ERF DOMAIN PROTEIN 9)	S.X.	H.G.	Please select
0.54	75.7	1607118_at	CB982987	-	-	2e+0	At3g61090	unknown protein	S.X.	H.G.	Please select
0.50	72.7	1612713_at	BQ797805	similar to histone H3	-	3e-57	At5g10980	histone H3	S.X.	H.G.	Please select
0.43	61.5	1606505_at	CB970568	hypothetical protein LOC100257948	-	3e+0	At3g21570	unknown protein	S.X.	H.G.	Please select
0.42	60.1	1621177_at	CF215740	hypothetical protein LOC100258972	-	4e+0	At1g48325	Expressed protein	S.X.	H.G.	Please select
0.41	58.7	1611948_at	CF215154	hypothetical protein LOC100249742	-	5e-103	At1g52280	AtRABG3d (Arabidopsis Rab GTPase homolog G3d)	S.X.	H.G.	Please select
0.39	54.9	1615283_at	CD799238	hypothetical protein LOC100258625	-	2e-3	At4g27270	quinone reductase family protein	S.X.	H.G.	Please select
0.35	48.5	AFFX-BioDn-5_at	AFFX-BioDn-5	-	-	0			S.X.	H.G.	Please select
0.33	45.7	AFFX-Vvi-X03453-2_s_at	-	-	-	0			S.X.	H.G.	Please select
0.30	39.4	1606994_at	CD004387	hypothetical protein LOC100246089	-	6e-10	At5g16510	reversibly glycosylated polypeptide, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.0	94.2	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.0	94.2	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.8	93.4	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436370	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436424	V. riparia (VR, PI588259) SD, 13h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.3	90.7	GSM436428	V. riparia (VR, PI588259) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436385	Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e-6	52	1621760_at	BQ794397	hypothetical protein LOC100241392	-	1e-8	At1g50640	ERF3 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 3)	C.G.	S.X.	Please select
0.02	7e-4	44	1616198_at	CF405950	hypothetical protein LOC100242144	-	1e-7	At1g28370	ERF11 (ERF DOMAIN PROTEIN 11)	C.G.	S.X.	Please select
0.02	1e-2	40	1611910_s_at	AY395745.1	similar to putative ethylene response factor ERF3b	-	9e-14	At3g15210	ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)	C.G.	S.X.	Please select
0.02	1e-2	40	1609990_at	CB009298	similar to putative ethylene response factor ERF3b	-	1e-13	At3g15210	ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)	C.G.	S.X.	Please select
0.03	4e-2	38	1621080_at	CF568964	-	-	1e-18	At1g28360	ERF12 (ERF DOMAIN PROTEIN 12)	C.G.	S.X.	Please select
0.02	2e-1	36	1622015_at	CF605567	hypothetical protein LOC100263691	-	1e+0	At3g06050	PRXIIF (PEROXIREDOXIN IIF)	C.G.	S.X.	Please select
0.02	2e-1	36	1621808_s_at	CF215238	hypothetical protein LOC100264533	-	2e-3	At4g37300	MEE59 (maternal effect embryo arrest 59)	C.G.	S.X.	Please select
0.01	2e-1	36	1621379_at	CF214294	hypothetical protein LOC100267719	-	2e-4	At1g26750	unknown protein	C.G.	S.X.	Please select
0.01	2e-1	36	1619012_s_at	CB347420	hypothetical protein LOC100258081 /// thioredoxin h	-	4e-2	At1g11530	ATCXXS1 (C-terminal cysteine residue is changed to a serine 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	9e-3	42	Arabidopsis thaliana	At5g44210	834444	ERF9 (ERF DOMAIN PROTEIN 9)	encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-9). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.12	9e-13	75	Glycine max	Gma.1124.1.S1_at	AW757129	-	-	1e-14	At1g50640	ERF3 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 3)	C.G.	S.X.	Please select
0.03	7e-2	38	Hordeum vulgare	Contig3234_s_at	Contig3234	-	-	1e+0	At1g12810	proline-rich family protein	C.G.	S.X.	Please select
0.08	5e-3	44	Oryza sativa	Os04g0399800	9632.m03131	-	Pathogenesis-related genes transcriptionalactivator PTI5	7e-6	At5g13910	LEP (LEAFY PETIOLE)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	1e-11	71	Populus trichocarpa	Ptp.866.1.S1_at	CK093360	AP2/ERF domain-containing transcription factor	-	6e-7	At1g28160	ethylene-responsive element-binding family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	6e-1	36	Triticum aestivum	Ta.7067.1.S1_x_at	BQ801766	-	-	1e+0	At3g17609	HYH (HY5-HOMOLOG)	C.G.	S.X.	Please select
0.03	4e+0	32	Zea mays	ZmAffx.967.1.S1_s_at	AI668376	Hypothetical protein LOC100193584	-	1e+1	At5g29613	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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