CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1622354_at

Gene name hypothetical protein LOC100259497

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.89 95.5 1622354_at CF414455 hypothetical protein LOC100259497 - 4e+0 At4g32690 GLB3 S.X. H.G.
0.82 93.9 1621958_at CF203054.1 hypothetical protein LOC100263890 - 4e-6 At3g12685 - S.X. H.G.
0.52 73.9 1616407_at CD715829 hypothetical protein LOC100250971 - 7e-9 At1g52510 hydrolase, alpha/beta fold family protein S.X. H.G.
0.35 48.5 1610420_at CA816989 hypothetical protein LOC100263772 - 6e-30 At1g73060 unknown protein S.X. H.G.
0.29 37.7 1610774_at CD012179 hypothetical protein LOC100268058 - 2e-25 At4g39710 immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative S.X. H.G.
0.27 34.0 1618918_at CA817284 - - 3e-10 At1g78915 binding S.X. H.G.
0.22 25.6 1611203_at CF513211 hypothetical protein LOC100258402 - 4e-11 At5g16710 DHAR3 (dehydroascorbate reductase 1) S.X. H.G.
0.20 22.4 1621285_at CB347466 hypothetical protein LOC100251632 - 3e-24 At4g01310 ribosomal protein L5 family protein S.X. H.G.
0.13 13.3 1616930_at CA809522 hypothetical protein LOC100248423 - 3e-14 At5g58260 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.1 99.1 GSM147705 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation 34
6.9 99.1 GSM147694 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 24 h post inoculation 23
6.9 99.1 GSM147706 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 24 h post inoculation 35
6.6 98.9 GSM147690 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation 19
5.7 98.5 GSM147678 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 7
5.6 98.4 GSM299461 C_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.5 98.4 GSM147672 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 1
5.4 98.3 GSM147681 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 10
5.3 98.2 GSM147700 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 24 h post inoculation 29
5.2 98.2 GSM147695 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation 24
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-2 38 1611556_at CB913062 - - 7e+0 At1g76460 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.03 2e-2 38 1607789_at CF604176 hypothetical protein LOC100258188 - 7e+0 At1g76460 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.03 3e-1 34 1620401_at CF207988 - - 7e-3 At2g27530 PGY1 (PIGGYBACK1) C.G. S.X.
0.01 1e+0 32 1614614_at CB910349 hypothetical protein LOC100256846 - 2e-2 At2g46240 BAG6 (BCL-2-ASSOCIATED ATHANOGENE 6) C.G. S.X.
0.02 1e+0 32 1612066_at CF607715 beclin 1 protein - 5e-48 At3g61710 autophagy protein Apg6 family C.G. S.X.
0.02 1e+0 32 1611751_at CD003966 hypothetical protein LOC100243104 - 5e-7 At1g71480 nuclear transport factor 2 (NTF2) family protein C.G. S.X.
0.02 1e+0 32 1610872_at CB969190 hypothetical protein LOC100259793 - 1e-16 At1g02050 chalcone and stilbene synthase family protein C.G. S.X.
0.02 1e+0 32 1607976_at CD003966 - - 5e-7 At1g71480 nuclear transport factor 2 (NTF2) family protein C.G. S.X.
0.03 4e+0 30 1622167_at CB007965 hypothetical protein LOC100249144 - 9e-5 At5g23410 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e+0 32 Arabidopsis thaliana At4g32690 829404 GLB3 Encodes a hemoglobin (Hb) with a central domain similar to the 'truncated Hbs of bacteria, protozoa and fungi. The 3D structure of these types of Hbs is a 2-on-2 arrangement of alpha-helices as opposed to the 3-on-3 arrangement of the standard globin fold. This type of Hb is not found in animals or yeast. - - - C.G. S.X.
0.05 1e+0 34 Glycine max GmaAffx.90539.1.S1_at CF806264 - - 4e-1 At3g15680 zinc finger (Ran-binding) family protein C.G. S.X.
0.07 8e-9 59 Hordeum vulgare Contig9183_at Contig9183 - - 3e-9 At5g25770 unknown protein C.G. S.X.
0.06 1e-4 48 Oryza sativa Os.7823.1.S1_at - - - 0 C.G. S.X.
0.12 3e-20 99 Populus trichocarpa PtpAffx.4022.1.S1_at CV225588 hypothetical protein - 9e-28 At5g25770 unknown protein C.G. S.X.
0.04 4e+0 32 Triticum aestivum Ta.4978.2.A1_a_at BQ171795 - - 2e-1 At3g09630 60S ribosomal protein L4/L1 (RPL4A) C.G. S.X.
0.03 2e+0 32 Zea mays Zm.17965.1.A1_at CK826919 - - 1e+0 At3g32160 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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