CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1622319_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 89.5 1622319_at CD720399 - - 1e+0 At2g31957 LCR75 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 75) S.X. H.G.
0.39 54.9 1617135_at CF403479 hypothetical protein LOC100247104 - 2e-11 At1g32220 binding / catalytic/ coenzyme binding S.X. H.G.
0.26 32.0 1617044_at CF214526 - - 6e-32 At5g14660 PDF1B (PEPTIDE DEFORMYLASE 1B) S.X. H.G.
0.21 24.0 1611124_at CA818028 similar to Probable pyridoxal biosynthesis protein PDX1 - 5e-60 At5g01410 RSR4 (REDUCED SUGAR RESPONSE 4) S.X. H.G.
0.20 22.4 1608998_at CA809208 hypothetical protein LOC100264883 - 5e-35 At5g16810 ATP binding / protein kinase S.X. H.G.
0.09 9.4 1611993_at CA809254 hypothetical protein LOC100246866 - 6e-32 At4g35000 APX3 (ASCORBATE PEROXIDASE 3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.1 99.1 GSM322366 genotype: Chardonnay - disease type: Healthy - rep3 GSE12842 Gene expression in grapevine in response to Bois noir infection
5.3 98.2 GSM322368 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
4.3 97.2 GSM322364 genotype: Chardonnay - disease type: Healthy - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
4.2 97.1 GSM322365 genotype: Chardonnay - disease type: Healthy - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
3.6 96.0 GSM147701 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation 30
3.5 95.7 GSM322367 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
3.1 94.6 GSM147687 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 16
3.0 94.2 GSM147707 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation 36
3.0 94.2 GSM147689 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation 18
2.9 93.8 GSM322370 genotype: Incrocio Manzoni - disease type: Healthy - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e-1 34 1622066_at BQ796916 hypothetical protein LOC100252520 - 1e-4 At5g11380 DXPS3 (1-deoxy-D-xylulose 5-phosphate synthase 3) C.G. S.X.
0.02 4e-1 34 1618009_at CD714666 similar to heat shock protein 90 - 0 At5g56000 heat shock protein 81-4 (HSP81-4) C.G. S.X.
0.02 4e-1 34 1613583_at CD003621 hypothetical protein LOC100248944 - 4e-1 At2g44150 ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) C.G. S.X.
0.02 4e-1 34 1609802_at CD003621 - - 4e-1 At2g44150 ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) C.G. S.X.
0.03 2e+0 32 1614573_s_at BQ796609 hypothetical protein LOC100251313 - 4e+0 At3g23727 SCRL12 (SCR-Like 12) C.G. S.X.
0.03 2e+0 32 1611347_at BQ796609 - - 4e+0 At3g23727 SCRL12 (SCR-Like 12) C.G. S.X.
0.03 2e+0 32 1611295_at CD800045 - - 9e-23 At3g01350 proton-dependent oligopeptide transport (POT) family protein C.G. S.X.
0.03 2e+0 32 1610689_at CB969755 hypothetical LOC100252368 - 8e-1 At1g63055 unknown protein C.G. S.X.
0.03 2e+0 32 1607237_at CF415277 hypothetical protein LOC100244947 - 2e-14 At3g46560 TIM9 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e+0 34 Arabidopsis thaliana At2g31957 3768007 LCR75 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 75) Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family. - - - C.G. S.X.
0.05 7e-3 42 Glycine max Gma.12916.1.A1_at CD395394 - - 2e-2 At3g60670 zinc-binding protein, putative C.G. S.X.
0.03 3e+0 32 Hordeum vulgare HVSMEm0022J02f2_at HVSMEm0022J02f2 - - 2e-1 At4g28700 AMT1 C.G. S.X.
0.05 2e-1 38 Oryza sativa Os09g0436900 AK119610.1 - Protein of unknown function DUF1350 family protein 6e-2 At2g40690 GLY1 C.G. S.X.
0.34 2e-21 103 Populus trichocarpa PtpAffx.206619.1.S1_at pmrna13146 hypothetical protein - 2e-28 At3g43540 unknown protein C.G. S.X.
0.04 3e-1 36 Triticum aestivum TaAffx.84457.1.S1_at CA636385 - - 7e+0 At5g42655 - C.G. S.X.
0.02 9e+0 30 Zea mays Zm.8160.1.A1_at BM337443 hypothetical protein LOC100274775 - 2e-2 At3g09032 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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