Gene omics information

Query gene ID	1622315_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.92	99.0	1622315_at	CF206112.1	-	-	2e-15	At5g55220	trigger factor type chaperone family protein	S.X.	H.G.	Please select
0.46	66.5	1614903_at	CF213705	hypothetical protein LOC100258657	-	6e-3	At5g47630	mtACP3 (mitochondrial acyl carrier protein 3)	S.X.	H.G.	Please select
0.43	61.5	1612114_at	BQ797697	hypothetical protein LOC100264713	-	1e+0	At5g60000	unknown protein	S.X.	H.G.	Please select
0.40	57.7	1621285_at	CB347466	hypothetical protein LOC100251632	-	3e-24	At4g01310	ribosomal protein L5 family protein	S.X.	H.G.	Please select
0.36	50.7	1617425_at	BQ799379	hypothetical protein LOC100242172	-	2e-12	At5g21920	YGGT family protein	S.X.	H.G.	Please select
0.19	20.9	1615690_at	CD715586	-	-	9e-10	At4g12910	scpl20 (serine carboxypeptidase-like 20)	S.X.	H.G.	Please select
0.18	19.4	1612129_at	CA813602	-	-	3e-1	At1g71290	F-box family protein-related	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
20.4	99.9	GSM147693	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	22
16.1	99.9	GSM147692	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation	21
14.0	99.8	GSM147673	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	2
10.5	99.7	GSM147674	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	3
9.0	99.5	GSM147675	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	4
8.4	99.4	GSM147678	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	7
7.1	99.1	GSM147695	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation	24
7.0	99.1	GSM147672	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	1
6.7	99.0	GSM147685	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	14
6.5	98.9	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.92	0	1287	1617061_s_at	CD003896	hypothetical protein LOC100243475	-	2e-15	At5g55220	trigger factor type chaperone family protein	C.G.	S.X.	Please select
0.03	1e-1	36	1621861_at	CF209183	-	-	5e-15	At5g55700	BAM4 (BETA-AMYLASE 4)	C.G.	S.X.	Please select
0.02	5e-1	34	1612088_at	CF403659	hypothetical protein LOC100252369	-	6e-1	At4g08230	glycine-rich protein	C.G.	S.X.	Please select
0.02	2e+0	32	1622364_at	CF606509	-	-	2e+0	At5g62750	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1616411_at	CF518885	hypothetical protein LOC100241770	-	1e+0	At4g12735	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1611179_at	CB919891	-	-	6e-3	At5g56760	ATSERAT1	C.G.	S.X.	Please select
0.02	2e+0	32	1607366_at	CB919891	hypothetical protein LOC100264650	-	6e-3	At5g56760	ATSERAT1	C.G.	S.X.	Please select
0.02	7e+0	30	1622819_at	BQ798887	hypothetical protein LOC100264319	-	5e-18	At4g00110	GAE3 (UDP-D-GLUCURONATE 4-EPIMERASE 3)	C.G.	S.X.	Please select
0.02	7e+0	30	1622126_at	CF568916	-	-	7e-8	At4g08230	glycine-rich protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	2e-15	83	Arabidopsis thaliana	At5g55220	835615	trigger factor type chaperone family protein	F:peptidyl-prolyl cis-trans isomerase activity;P:protein folding, protein transport;C:chloroplast, chloroplast stroma, chloroplast envelope;BOMPFV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.33	7e-59	228	Glycine max	Gma.3438.1.S1_at	CD399306	-	-	1e-9	At5g55220	trigger factor type chaperone family protein	C.G.	S.X.	Please select
0.05	3e+0	32	Hordeum vulgare	Contig20886_at	Contig20886	-	-	5e-1	At1g52260	ATPDIL1-5 (PDI-LIKE 1-5)	C.G.	S.X.	Please select
0.03	1e-2	42	Oryza sativa	Os06g0308000	AK099680.1	-	Trigger factor-like protein	6e-5	At5g55220	trigger factor type chaperone family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.38	2e-99	363	Populus trichocarpa	PtpAffx.212729.1.S1_at	pmrna24899	hypothetical protein	-	5e-11	At5g55220	trigger factor type chaperone family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e+0	34	Triticum aestivum	TaAffx.7877.1.S1_at	CA645821	-	-	4e+0	At5g45550	mob1/phocein family protein	C.G.	S.X.	Please select
0.04	3e+0	32	Zea mays	ZmAffx.425.1.A1_at	AI676858	-	-	8e-1	At5g40900	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage