Gene omics information

Query gene ID	1622302_s_at
Gene name	hypothetical protein LOC100245459
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.3	1622302_s_at	CF207602	hypothetical protein LOC100245459	-	2e-19	At5g66570	PSBO1 (PS II OXYGEN-EVOLVING COMPLEX 1)	S.X.	H.G.	Please select
0.91	98.8	1613494_s_at	CA813944	probable oxygen-evolving enhancer protein 2	-	2e-22	At1g06680	PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1)	S.X.	H.G.	Please select
0.73	90.8	1611582_s_at	CB970190	hypothetical protein LOC100245393	-	5e-5	At1g44575	NPQ4 (NONPHOTOCHEMICAL QUENCHING)	S.X.	H.G.	Please select
0.61	83.2	1613447_s_at	CA814567	chlorophyll a/b binding protein	-	1e-4	At1g61520	LHCA3	S.X.	H.G.	Please select
0.60	81.9	1617645_s_at	CA818763	hypothetical protein LOC100257292	-	2e-96	At5g46110	APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2)	S.X.	H.G.	Please select
0.50	72.7	1614784_s_at	CB968637	chlorophyll a/b binding protein	-	3e-46	At1g61520	LHCA3	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.6	96.0	GSM147676	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	5
3.6	96.0	GSM147675	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	4
3.6	96.0	GSM147705	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	34
3.6	96.0	GSM147687	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	16
3.4	95.5	GSM147704	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation	33
3.3	95.2	GSM147684	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	13
3.3	95.2	GSM147695	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation	24
3.0	94.2	GSM147681	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	10
2.9	93.8	GSM147706	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 24 h post inoculation	35
2.9	93.8	GSM147693	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	22

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.64	0	1063	1614317_at	CF201355.1	hypothetical protein LOC100245459	-	2e-2	At4g37230	oxygen-evolving enhancer protein, chloroplast, putative / 33 kDa subunit of oxygen evolving system of photosystem II, putative	C.G.	S.X.	Please select
0.15	1e-66	252	1614985_at	CB977218	hypothetical protein LOC100268005	-	3e-71	At5g19550	ASP2 (ASPARTATE AMINOTRANSFERASE 2)	C.G.	S.X.	Please select
0.28	2e-59	228	1607516_at	CB972913	hypothetical protein LOC100260811	-	9e-22	At5g66570	PSBO1 (PS II OXYGEN-EVOLVING COMPLEX 1)	C.G.	S.X.	Please select
0.03	3e-3	42	1610126_at	CB982972	hypothetical protein LOC100256163	-	4e-31	At5g19550	ASP2 (ASPARTATE AMINOTRANSFERASE 2)	C.G.	S.X.	Please select
0.02	4e-2	38	1608616_at	CF208819	-	-	2e+0	At5g53880	unknown protein	C.G.	S.X.	Please select
0.02	6e-1	34	1616423_at	BM437002	-	-	3e-2	At1g02400	GA2OX6 (GIBBERELLIN 2-OXIDASE 6)	C.G.	S.X.	Please select
0.01	6e-1	34	1615562_at	CD007201	hypothetical protein LOC100250699	-	2e-7	At4g32720	AtLa1 (Arabidopsis thaliana La protein 1)	C.G.	S.X.	Please select
0.02	6e-1	34	1614136_at	CB347754	hypothetical protein LOC100246668	-	7e-55	At5g47670	NF-YB6 (NUCLEAR FACTOR Y, SUBUNIT B6)	C.G.	S.X.	Please select
0.02	6e-1	34	1612627_at	BM437002	hypothetical protein LOC100258599	-	3e-2	At1g02400	GA2OX6 (GIBBERELLIN 2-OXIDASE 6)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.18	2e-19	97	Arabidopsis thaliana	At5g66570	836789	PSBO1 (PS II OXYGEN-EVOLVING COMPLEX 1)	Encodes a protein which is an extrinsic subunit of photosystem II and which has been proposed to play a central role in stabilization of the catalytic manganese cluster. In Arabidopsis thaliana the PsbO proteins are encoded by two genes: psbO1 and psbO2. PsbO1 is the major isoform in the wild-type.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.38	9e-50	198	Glycine max	Gma.11034.1.S1_at	CD395177	-	-	5e-26	At5g66570	PSBO1 (PS II OXYGEN-EVOLVING COMPLEX 1)	C.G.	S.X.	Please select
0.03	1e+0	34	Hordeum vulgare	Contig6723_at	Contig6723	-	-	4e-1	At5g65220	ribosomal protein L29 family protein	C.G.	S.X.	Please select
0.07	7e-8	59	Oryza sativa	Os01g0501800	AK119188.1	-	Oxygen-evolving enhancer protein 1, chloroplastprecursor (OEE1) (33 kDa subunit of oxygen evolvingsystem of photosystem II) (OEC 33 kDa subunit) (33 kDathylakoid membrane protein)	2e-16	At3g50820	PSBO2 (PHOTOSYSTEM II SUBUNIT O-2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.42	1e-91	337	Populus trichocarpa	Ptp.5959.1.A1_at	CV283959	hypothetical protein	-	8e-40	At5g66570	PSBO1 (PS II OXYGEN-EVOLVING COMPLEX 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.09	6e-10	65	Triticum aestivum	Ta.21596.1.S1_at	CA696691	-	-	3e-16	At3g50820	PSBO2 (PHOTOSYSTEM II SUBUNIT O-2)	C.G.	S.X.	Please select
0.06	4e-6	52	Zea mays	Zm.3895.1.A1_at	BM079254	hypothetical protein LOC100272890	-	1e-30	At3g50820	PSBO2 (PHOTOSYSTEM II SUBUNIT O-2)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage