Gene omics information

Query gene ID	1622299_s_at
Gene name	hypothetical protein LOC100255647
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.44	64.1	1622299_s_at	CK136935.1	hypothetical protein LOC100255647	-	7e-10	At5g54190	PORA	S.X.	H.G.	Please select
0.47	67.7	1607621_at	CF406023	hypothetical protein LOC100259213	-	2e-5	At5g13400	proton-dependent oligopeptide transport (POT) family protein	S.X.	H.G.	Please select
0.42	60.1	1612100_at	CF215638	hypothetical protein LOC100248200	-	4e+0	At5g03840	TFL1 (TERMINAL FLOWER 1)	S.X.	H.G.	Please select
0.38	53.6	1609644_at	BQ799340	hypothetical protein LOC100260722 /// hypothetical protein LOC100260971 /// hypothetical protein LOC100262489	-	2e-14	At2g24280	serine carboxypeptidase S28 family protein	S.X.	H.G.	Please select
0.26	32.0	1609122_at	CB003768	hypothetical protein LOC100267142	-	7e-27	At2g04530	CPZ	S.X.	H.G.	Please select
0.25	30.5	1612553_at	CF514076	hypothetical protein LOC100255895	-	4e-36	At5g14260	SET domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.2	99.7	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
8.9	99.5	GSM147692	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation	21
7.5	99.2	GSM147698	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation	27
7.5	99.2	GSM147674	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	3
7.3	99.2	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
6.7	99.0	GSM147686	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	15
6.0	98.7	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
5.7	98.5	GSM147716	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	45
5.1	98.1	GSM147704	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation	33
4.7	97.7	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	670	1620451_at	CK136935.1	-	-	7e-10	At5g54190	PORA	C.G.	S.X.	Please select
1.00	0	670	1607771_at	CK136935.1	-	-	7e-10	At5g54190	PORA	C.G.	S.X.	Please select
0.35	5e-147	517	1619717_at	CF210684	hypothetical protein LOC100255647	-	1e-67	At5g54190	PORA	C.G.	S.X.	Please select
0.63	1e-33	141	1620005_at	CK136937.1	-	-	4e+0	At4g16805	unknown protein	C.G.	S.X.	Please select
0.02	7e-1	32	1620673_at	BQ797073	hypothetical protein LOC100267988	-	5e-73	At2g01140	fructose-bisphosphate aldolase, putative	C.G.	S.X.	Please select
0.03	3e+0	30	1616854_at	CF203729.1	-	-	8e-5	At4g31290	ChaC-like family protein	C.G.	S.X.	Please select
0.02	3e+0	30	1614749_s_at	CB346852	hypothetical protein LOC100261255	-	4e-20	At4g31290	ChaC-like family protein	C.G.	S.X.	Please select
0.03	3e+0	30	1610357_at	AY427136.1	-	-	5e-9	At3g51550	FER (FERONIA)	C.G.	S.X.	Please select
0.03	3e+0	30	1608701_at	CD797635	hypothetical protein LOC100254674	-	1e-3	At1g23100	10 kDa chaperonin, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	7e-10	63	Arabidopsis thaliana	At5g54190	835507	PORA	light-dependent NADPH:protochlorophyllide oxidoreductase A	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.17	2e-14	79	Glycine max	Gma.2542.1.S1_at	CD409405	-	-	5e-42	At4g27440	PORB (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE B)	C.G.	S.X.	Please select
0.04	1e+0	32	Hordeum vulgare	HZ48K22r_s_at	HZ48K22r	glyceraldehyde-3-phosphate dehydrogenase	-	3e-13	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	C.G.	S.X.	Please select
0.07	5e+0	32	Oryza sativa	Os11g0459500	9639.m02428	-	Hypothetical protein	5e+0	At5g63085	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.32	1e-24	113	Populus trichocarpa	PtpAffx.102038.1.A1_at	CV240356	hypothetical protein	-	4e-75	At5g54190	PORA	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+1	30	Triticum aestivum	TaAffx.6158.1.S1_at	CA690734	-	-	4e+0	At4g10140	unknown protein	C.G.	S.X.	Please select
0.03	1e-3	42	Zea mays	Zm.7136.1.S1_at	CO526700	NADPH-protochlorophyllide oxidoreductase	-	6e-11	At4g27440	PORB (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE B)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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