Gene omics information

Query gene ID	1622282_at
Gene name	hypothetical protein LOC100245852
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	89.5	1622282_at	CD712313	hypothetical protein LOC100245852	-	2e-10	At1g06020	pfkB-type carbohydrate kinase family protein	S.X.	H.G.	Please select
0.56	79.4	1608328_s_at	CF609703	hypothetical protein LOC100257331	-	3e-2	At1g75388	CPuORF5 (Conserved peptide upstream open reading frame 5)	S.X.	H.G.	Please select
0.55	77.3	1618478_at	CF515277	hypothetical protein LOC100259390	-	4e-3	At2g34850	MEE25 (maternal effect embryo arrest 25)	S.X.	H.G.	Please select
0.40	57.7	1614440_at	BQ796922	3-deoxy-D-arabino-heptulosonate 7-phosphate synthase	-	2e-53	At4g39980	DHS1 (3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE 1)	S.X.	H.G.	Please select
0.35	48.5	1610233_at	CF201218.1	hypothetical protein LOC100260900	-	1e-4	At2g22540	SVP (SHORT VEGETATIVE PHASE)	S.X.	H.G.	Please select
0.22	25.6	1615742_at	CB970670	5-enolpyruvylshikimate-3-phosphate synthase	-	8e-121	At2g45300	3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.1	99.7	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
8.8	99.5	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.9	98.6	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.3	98.2	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.5	97.5	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.1	96.9	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.0	94.2	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.9	93.8	GSM436412	V. riparia (VR, PI588259) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.8	93.4	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e-11	69	1616255_at	CF516475	hypothetical protein LOC100262010	-	4e-10	At4g10260	pfkB-type carbohydrate kinase family protein	C.G.	S.X.	Please select
0.03	5e-5	48	1622806_at	CB009073	hypothetical protein LOC100258640	-	6e-87	At1g66430	pfkB-type carbohydrate kinase family protein	C.G.	S.X.	Please select
0.03	5e-5	48	1610147_at	CB009073	-	-	6e-87	At1g66430	pfkB-type carbohydrate kinase family protein	C.G.	S.X.	Please select
0.02	5e-2	38	1616288_at	CF605545	-	-	4e+0	At2g39920	acid phosphatase class B family protein	C.G.	S.X.	Please select
0.02	5e-2	38	1612490_at	CB035871	-	-	4e+0	At2g39920	acid phosphatase class B family protein	C.G.	S.X.	Please select
0.02	2e-1	36	1619460_at	CB339411	-	-	1e+0	At3g55330	PPL1 (PsbP-like protein 1)	C.G.	S.X.	Please select
0.02	3e+0	32	1622603_at	CB344263	hypothetical protein LOC100247693	-	3e-19	At3g25400	-	C.G.	S.X.	Please select
0.01	3e+0	32	1621881_at	CF404940	hypothetical protein LOC100245111	-	3e-52	At4g27450	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	1621053_at	CF414284	hypothetical protein LOC100258640	-	1e-9	At1g66430	pfkB-type carbohydrate kinase family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.34	2e-10	67	Arabidopsis thaliana	At1g06020	837111	pfkB-type carbohydrate kinase family protein	F:kinase activity, ribokinase activity;P:D-ribose metabolic process, acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase;C:unknown;BOPAMF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.50	8e-60	232	Glycine max	Gma.2139.2.S1_s_at	AW350419	-	-	2e-35	At3g59480	pfkB-type carbohydrate kinase family protein	C.G.	S.X.	Please select
0.15	6e-21	101	Hordeum vulgare	Contig101_at	Contig101	-	-	1e-2	At1g06030	pfkB-type carbohydrate kinase family protein	C.G.	S.X.	Please select
0.12	3e-20	101	Oryza sativa	Os01g0894300	AF429948.1	-	Fructokinase (Fragment)	4e-6	At2g31390	pfkB-type carbohydrate kinase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.48	1e-33	145	Populus trichocarpa	Ptp.2441.1.S1_x_at	CV225767	hypothetical protein	-	2e-38	At3g59480	pfkB-type carbohydrate kinase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.17	6e-23	109	Triticum aestivum	Ta.10107.1.S1_at	BQ752620	-	-	1e-2	At2g31390	pfkB-type carbohydrate kinase family protein	C.G.	S.X.	Please select
0.15	9e-17	87	Zea mays	Zm.6169.1.A1_at	AY197772.1	fructokinase 1	-	5e-11	At1g06030	pfkB-type carbohydrate kinase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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