Gene omics information

Query gene ID	1622268_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.74	91.0	1622268_at	CF372312	-	-	9e-16	At4g11110	SPA2 (SPA1-RELATED 2)	S.X.	H.G.	Please select
0.33	45.7	1611447_at	CB977653	hypothetical protein LOC100259643	-	2e-1	At2g47590	PHR2 (photolyase/blue-light receptor 2)	S.X.	H.G.	Please select
0.32	43.1	1609831_at	BQ794470	hypothetical protein LOC100263800	-	3e-1	At3g63230	unknown protein	S.X.	H.G.	Please select
0.32	43.1	1618047_at	CF207570	hypothetical protein LOC100241851	-	1e-5	At2g41790	peptidase M16 family protein / insulinase family protein	S.X.	H.G.	Please select
0.27	34.0	1621680_x_at	CF202023.1	-	-	3e-1	At1g76220	unknown protein	S.X.	H.G.	Please select
0.20	22.4	1620279_at	CB923067	hypothetical protein LOC100255680	-	1e+0	At3g06870	proline-rich family protein	S.X.	H.G.	Please select
0.20	22.4	1613529_at	CF214571	hypothetical protein LOC100260925	-	4e+0	At5g37520	unknown protein	S.X.	H.G.	Please select
0.19	20.9	1609776_at	CB979308	hypothetical protein LOC100252635	-	1e-19	At1g73875	endonuclease/exonuclease/phosphatase family protein	S.X.	H.G.	Please select
0.17	18.2	1620612_s_at	CF208882	similar to ADP-ribosylation factor	-	4e-128	At2g47170	ARF1A1C	S.X.	H.G.	Please select
0.17	18.2	1614969_at	CA810356	hypothetical protein LOC100252305	-	3e+0	At4g00390	transcription regulator	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.1	94.6	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.8	93.4	GSM147719	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	48
2.8	93.4	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
2.7	93.0	GSM147724	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	53
2.6	92.5	GSM287875	Green hard berry C17 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM147731	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	60
2.4	91.3	GSM147730	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	59
2.3	90.7	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM147742	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	71
2.3	90.7	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-1	36	1615260_at	CF372907	similar to FAD-binding domain-containing protein	-	4e-4	At1g32310	unknown protein	C.G.	S.X.	Please select
0.01	2e-1	36	1613468_at	CF405048	hypothetical protein LOC100250231	-	3e-55	At3g04730	IAA16	C.G.	S.X.	Please select
0.01	9e-1	34	1619499_at	CF208527	hypothetical protein LOC100243214	-	1e-4	At5g58220	TTL (Transthyretin-Like protein)	C.G.	S.X.	Please select
0.02	9e-1	34	1616611_at	CF404283	-	-	2e-1	At2g33220	-	C.G.	S.X.	Please select
0.01	3e+0	32	1620591_at	CF207697	hypothetical protein LOC100253168	-	1e-10	At5g51050	mitochondrial substrate carrier family protein	C.G.	S.X.	Please select
0.02	3e+0	32	1620649_at	AY427191.1	-	-	5e-1	At3g53550	-	C.G.	S.X.	Please select
0.01	3e+0	32	1620315_at	CF604880	-	-	3e-6	At2g36480	zinc finger (C2H2-type) family protein	C.G.	S.X.	Please select
0.01	3e+0	32	1618620_at	CF403144	hypothetical protein LOC100262172	-	5e-10	At3g55960	NLI interacting factor (NIF) family protein	C.G.	S.X.	Please select
0.02	3e+0	32	1616891_at	AY427191.1	-	-	5e-1	At3g53550	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	9e-16	85	Arabidopsis thaliana	At4g11110	826712	SPA2 (SPA1-RELATED 2)	Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA2 primarily regulates seedling development in darkness and has little function in light-grown seedlings or adult plants.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.19	4e-37	157	Glycine max	GmaAffx.47194.1.S1_at	BF066713	-	-	3e-41	At4g11110	SPA2 (SPA1-RELATED 2)	C.G.	S.X.	Please select
0.08	4e-7	56	Hordeum vulgare	Contig14946_at	Contig14946	-	-	2e-1	At2g46340	SPA1 (SUPPRESSOR OF PHYA-105 1)	C.G.	S.X.	Please select
0.04	7e-12	73	Oryza sativa	Os05g0571000	AK111749.1	-	Protein kinase-like domain containing protein	4e-5	At4g11110	SPA2 (SPA1-RELATED 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.25	8e-125	448	Populus trichocarpa	PtpAffx.200384.1.S1_at	pmrna767	hypothetical protein	-	9e-26	At4g11110	SPA2 (SPA1-RELATED 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	2e-7	57	Triticum aestivum	TaAffx.122903.1.S1_at	CA596212	-	-	2e-1	At1g01305	unknown protein	C.G.	S.X.	Please select
0.02	8e-2	38	Zea mays	Zm.6207.2.A1_x_at	BM078651	60S ribosomal protein L15	-	2e-31	At4g17390	60S ribosomal protein L15 (RPL15B)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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