Gene omics information

Query gene ID	1622260_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.97	99.9	1622260_at	CD012303	-	-	2e+0	At3g30460	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.32	43.1	1610597_at	BQ800069	hypothetical protein LOC100251901	-	2e-9	At2g24100	unknown protein	S.X.	H.G.	Please select
0.32	43.1	1612510_at	CB919682	hypothetical protein LOC100250654	-	1e-10	At2g11520	CRCK3	S.X.	H.G.	Please select
0.30	39.4	1606642_at	CB920109	hypothetical protein LOC100257219	-	1e-3	At2g21620	RD2	S.X.	H.G.	Please select
0.19	20.9	1621814_at	CD720972	-	-	2e-28	At3g03560	unknown protein	S.X.	H.G.	Please select
0.19	20.9	1613359_at	CF605336	hypothetical protein LOC100264043	-	4e+0	At2g46410	CPC (CAPRICE)	S.X.	H.G.	Please select
0.19	20.9	1617352_at	CD721675	hypothetical protein LOC100257795	-	4e+0	At5g16330	NC domain-containing protein	S.X.	H.G.	Please select
0.19	20.9	1612961_a_at	CB971491	hypothetical protein LOC100252925	-	3e-17	At1g56700	pyrrolidone-carboxylate peptidase family protein	S.X.	H.G.	Please select
0.15	15.6	1614542_a_at	CB977655	hypothetical protein LOC100252925	-	2e-1	At2g36895	unknown protein	S.X.	H.G.	Please select
0.15	15.6	1621856_at	CF516490	hypothetical protein LOC100251400	-	2e-12	At1g51760	IAR3 (IAA-ALANINE RESISTANT 3)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.7	99.7	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
9.8	99.6	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.5	98.9	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.4	97.3	GSM436380	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
4.3	97.2	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.8	96.4	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.4	95.5	GSM287881	Green soft berry B10 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.3	95.2	GSM287883	Green soft berry A23 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.1	94.6	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.1	94.6	GSM436376	Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1392	1618470_at	CD012303	hypothetical protein LOC100253407	-	2e+0	At3g30460	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.03	4e-1	34	1620234_at	CA816993	hypothetical protein LOC100255239	-	4e+0	At3g23050	IAA7 (INDOLE-3-ACETIC ACID 7)	C.G.	S.X.	Please select
0.02	4e-1	34	1619413_at	CB344818	-	-	7e-6	At1g64850	calcium-binding EF hand family protein	C.G.	S.X.	Please select
0.02	4e-1	34	1607822_at	CB345091	-	-	7e-6	At1g64850	calcium-binding EF hand family protein	C.G.	S.X.	Please select
0.02	4e-1	34	1606923_s_at	CB344818	hypothetical protein LOC100255239	-	7e-6	At1g64850	calcium-binding EF hand family protein	C.G.	S.X.	Please select
0.01	2e+0	32	1619981_at	CB004603	similar to MtN19-like protein	-	8e-7	At5g61820	-	C.G.	S.X.	Please select
0.02	2e+0	32	1619106_at	CA809301	-	-	4e-23	At3g26618	ERF1-3 (eukaryotic release factor 1-3)	C.G.	S.X.	Please select
0.01	2e+0	32	1609310_at	CB342641	hypothetical protein LOC100249576	-	2e-177	At1g56190	phosphoglycerate kinase, putative	C.G.	S.X.	Please select
0.03	7e+0	30	1621670_at	CB003758	hypothetical protein LOC100245527	-	6e-3	At4g24570	mitochondrial substrate carrier family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At3g30460	822758	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	5e-1	36	Glycine max	Gma.2411.1.S1_a_at	BU548076	-	-	2e-13	At1g70530	protein kinase family protein	C.G.	S.X.	Please select
0.03	7e-1	34	Hordeum vulgare	HVSMEm0002G12r2_at	HVSMEm0002G12r2	-	-	1e+0	At4g26960	unknown protein	C.G.	S.X.	Please select
0.03	1e+1	32	Oryza sativa	OsAffx.5465.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.12	4e-11	69	Populus trichocarpa	PtpAffx.224636.1.S1_s_at	pmrna43370	hypothetical protein	-	2e-19	At1g70530	protein kinase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	6e+0	32	Triticum aestivum	TaAffx.5461.1.S1_at	CA710112	-	-	2e+0	At2g17660	nitrate-responsive NOI protein, putative	C.G.	S.X.	Please select
0.02	6e-1	34	Zea mays	Zm.5843.1.S1_at	AI649852	hypothetical protein LOC100279780	-	8e-7	At1g05570	CALS1 (CALLOSE SYNTHASE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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