Gene omics information

Query gene ID	1622248_at
Gene name	hypothetical protein LOC100256857
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	87.9	1622248_at	CF519150	hypothetical protein LOC100256857	-	1e+0	At4g08395	unknown protein	S.X.	H.G.	Please select
0.60	81.9	1621312_a_at	CF519150	hypothetical protein LOC100256857	-	1e+0	At4g08395	unknown protein	S.X.	H.G.	Please select
0.31	41.3	1606675_at	CB006583	hypothetical protein LOC100241072	-	1e-97	At3g02780	IPP2 (ISOPENTENYL PYROPHOSPHATE:DIMETHYLALLYL PYROPHOSPHATE ISOMERASE 2)	S.X.	H.G.	Please select
0.31	41.3	1613795_at	BQ794671	hypothetical protein LOC100259254	-	6e-47	At5g52560	ATUSP (ARABIDOPSIS THALIANA UDP-SUGAR PYROPHOSPHORYLASE)	S.X.	H.G.	Please select
0.22	25.6	1621434_at	CB005041	hypothetical LOC100252575	-	5e-2	At3g48050	DNA binding / protein binding / transcription regulator	S.X.	H.G.	Please select
0.05	6.0	1616174_at	CF516019	-	-	6e-2	At5g48350	nucleic acid binding	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
17.0	99.9	GSM287881	Green soft berry B10 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
13.6	99.8	GSM287887	Green soft berry C23 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
7.1	99.1	GSM287885	Green soft berry A22 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
6.3	98.8	GSM287895	Pink soft berry B13 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
6.0	98.7	GSM287896	Pink soft berry C27 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
5.7	98.5	GSM287890	Pink soft berry C25 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
5.6	98.4	GSM287903	Red soft berry A7 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
5.3	98.2	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
4.9	97.9	GSM287894	Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
4.3	97.2	GSM287897	Red soft berry C29 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.94	0	956	1621312_a_at	CF519150	hypothetical protein LOC100256857	-	1e+0	At4g08395	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	32	1617105_at	CB982332	similar to putative calcium-dependent protein kinase CPK1 adapter protein 2	-	6e-20	At5g66250	kinectin-related	C.G.	S.X.	Please select
0.02	1e+0	32	1615742_at	CB970670	5-enolpyruvylshikimate-3-phosphate synthase	-	8e-121	At2g45300	3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase	C.G.	S.X.	Please select
0.02	1e+0	32	1615093_at	CB981718	-	-	2e+0	At5g26622	beta-galactosidase	C.G.	S.X.	Please select
0.02	1e+0	32	1614958_at	CB347627	hypothetical protein LOC100241674	-	2e-6	At5g13050	5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE)	C.G.	S.X.	Please select
0.02	1e+0	32	1612360_at	CB970071	hypothetical protein LOC100244110	-	2e-152	At3g28710	H+-transporting two-sector ATPase, putative	C.G.	S.X.	Please select
0.03	1e+0	32	1608323_at	CF604255	hypothetical protein LOC100248532	-	9e-2	At5g08150	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	32	1607472_at	CF208707	hypothetical protein LOC100255051	-	6e-23	At1g59610	ADL3 (ARABIDOPSIS DYNAMIN-LIKE 3)	C.G.	S.X.	Please select
0.02	5e+0	30	1620166_at	CB982324	hypothetical protein LOC100266613	-	3e-6	At5g26230	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At4g08395	826397	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;M	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.17	1e-22	107	Glycine max	GmaAffx.52602.1.S1_at	BE658979	-	-	2e-1	At1g65000	unknown protein	C.G.	S.X.	Please select
0.08	2e-3	42	Hordeum vulgare	Contig15223_at	Contig15223	-	-	2e-1	At2g23260	UGT84B1 (UDP-glucosyl transferase 84B1)	C.G.	S.X.	Please select
0.05	1e-1	38	Oryza sativa	Os11g0136800	AK063731.1	-	Dual specificity protein phosphatase 19 (EC3.1.3.48) (EC 3.1.3.16) (Protein phosphatase SKRP1).Splice isoform 2	3e+0	At5g15560	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.31	2e-46	186	Populus trichocarpa	PtpAffx.206068.1.S1_at	pmrna12026	hypothetical protein	-	5e-1	At5g22555	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e-1	36	Triticum aestivum	TaAffx.71749.1.A1_at	CK212307	-	-	5e+0	At5g04740	ACT domain-containing protein	C.G.	S.X.	Please select
0.04	4e-1	34	Zea mays	Zm.4433.2.A1_x_at	AI714816	-	-	1e+1	At5g12330	LRP1 (LATERAL ROOT PRIMORDIUM 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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