Gene omics information

Query gene ID	1622241_x_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.75	91.3	1622241_x_at	CF205868.1	-	-	4e-1	At2g22155	-	S.X.	H.G.	Please select
0.32	43.1	1618276_at	CB349729	-	-	2e-2	At2g37600	60S ribosomal protein L36 (RPL36A)	S.X.	H.G.	Please select
0.29	37.7	1614522_at	CF202455.1	-	-	4e+0	At5g06040	self-incompatibility protein-related	S.X.	H.G.	Please select
0.25	30.5	1620683_at	CA811381	hypothetical protein LOC100245630	-	8e-9	At4g26160	ACHT1 (ATYPICAL CYS HIS RICH THIOREDOXIN 1)	S.X.	H.G.	Please select
0.13	13.3	1608546_at	CF212193	hypothetical protein LOC100254967	-	1e+1	At5g49230	HRB1 (HYPERSENSITIVE TO RED AND BLUE)	S.X.	H.G.	Please select
0.04	5.2	1619820_s_at	CA811381	hypothetical protein LOC100245630	-	8e-9	At4g26160	ACHT1 (ATYPICAL CYS HIS RICH THIOREDOXIN 1)	S.X.	H.G.	Please select
0.02	3.2	1606798_at	CF209842	glutamine synthetase	-	5e-42	At3g17820	ATGSKB6	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
18.8	99.9	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
9.8	99.6	GSM147729	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	58
8.3	99.4	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
6.7	99.0	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
6.3	98.8	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39
6.3	98.8	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
5.8	98.6	GSM147738	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	67
5.2	98.2	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49
5.0	98.0	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
4.7	97.7	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.86	9e-95	343	1616018_at	CF205868.1	-	-	4e-1	At2g22155	-	C.G.	S.X.	Please select
0.18	1e-35	147	1609744_at	CF203760.1	hypothetical protein LOC100240811 /// hypothetical protein LOC100263073	-	2e+0	At3g42630	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please select
0.02	4e-1	32	1616981_at	CB971105	phospholipase D alpha	-	4e-52	At3g15730	PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1)	C.G.	S.X.	Please select
0.02	2e+0	30	1611440_at	CB978779	hypothetical protein LOC100257657	-	1e-8	At1g49840	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	30	1610136_a_at	BQ792941	similar to Elongation factor Tu, chloroplastic	-	8e-56	At4g20360	ATRABE1B (ARABIDOPSIS RAB GTPASE HOMOLOG E1B)	C.G.	S.X.	Please select
0.03	2e+0	30	1609703_at	CF213302	similar to homeodomain protein ARBORKNOX1	-	2e-43	At1g62360	STM (SHOOT MERISTEMLESS)	C.G.	S.X.	Please select
0.04	7e+0	28	1622003_at	CF415247	hypothetical protein LOC100251511	-	3e-1	At3g15357	unknown protein	C.G.	S.X.	Please select
0.03	7e+0	28	1620040_at	CD715189	-	-	4e-16	Atcg00900	-	C.G.	S.X.	Please select
0.04	7e+0	28	1619748_at	CB002933	-	-	4e+0	At3g17950	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	4e-1	34	Arabidopsis thaliana	At2g22155	5007900	-	Encodes a ECA1 gametogenesis related family protein	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	5e-1	34	Glycine max	GmaAffx.37678.1.S1_at	BQ628402	-	-	6e-1	At3g57930	unknown protein	C.G.	S.X.	Please select
0.08	7e-1	32	Hordeum vulgare	Contig1317_s_at	Contig1317	-	-	1e+0	At5g17480	APC1 (ARABIDOPSIS POLLEN CALCIUM-BINDING PROTEIN 1)	C.G.	S.X.	Please select
0.11	3e+0	32	Oryza sativa	Os07g0684400	AK107109.1	-	Hypothetical protein	9e-1	At2g23985	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	5e-1	34	Populus trichocarpa	PtpAffx.158815.1.S1_at	CN524438	hypothetical protein	-	2e-18	At1g55960	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	2e+0	32	Triticum aestivum	TaAffx.27275.1.S1_at	CA678874	-	-	3e-1	At5g20510	AL5 (ALFIN-LIKE 5)	C.G.	S.X.	Please select
0.04	3e+0	30	Zea mays	Zm.4741.2.A1_x_at	BE345072	-	-	4e+0	At4g30460	glycine-rich protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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