Gene omics information

Query gene ID	1622193_at
Gene name	hypothetical protein LOC100265325
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	81.9	1622193_at	CF208331	hypothetical protein LOC100265325	-	2e-35	At5g30510	RPS1 (RIBOSOMAL PROTEIN S1)	S.X.	H.G.	Please select
0.80	93.6	1616390_at	CF211469	hypothetical protein LOC100248042	-	1e-41	At3g13120	30S ribosomal protein S10, chloroplast, putative	S.X.	H.G.	Please select
0.78	92.6	1621569_at	CD801894	hypothetical protein LOC100257626	-	4e-7	At3g27850	RPL12-C (ribosomal protein l12-c)	S.X.	H.G.	Please select
0.76	91.5	1614138_at	CA815957	hypothetical protein LOC100254839	-	3e-14	At1g68590	plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative	S.X.	H.G.	Please select
0.74	91.0	1620854_at	CA818411	hypothetical protein LOC100258321	-	7e-12	At1g29070	ribosomal protein L34 family protein	S.X.	H.G.	Please select
0.63	84.3	1616667_a_at	CB343534	similar to ribosomal protein L29 family protein /// hypothetical protein LOC100259766	-	7e-5	At5g65220	ribosomal protein L29 family protein	S.X.	H.G.	Please select
0.63	84.3	1608691_at	CB345817	hypothetical protein LOC100248623	-	6e-27	At1g78630	emb1473 (embryo defective 1473)	S.X.	H.G.	Please select
0.53	75.2	1606458_at	BQ792397	hypothetical protein LOC100251697	-	4e-11	At3g44890	RPL9 (RIBOSOMAL PROTEIN L9)	S.X.	H.G.	Please select
0.53	75.2	1606900_at	CA816931	hypothetical protein LOC100254016	-	4e-16	At5g14320	30S ribosomal protein S13, chloroplast (CS13)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.5	97.5	GSM147695	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation	24
4.3	97.2	GSM147678	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	7
4.1	96.9	GSM147679	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	8
4.0	96.7	GSM147699	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	28
3.9	96.6	GSM147672	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	1
3.8	96.4	GSM147673	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	2
3.8	96.4	GSM147691	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 4 h post inoculation	20
3.8	96.4	GSM147692	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation	21
3.8	96.4	GSM147675	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	4
3.8	96.4	GSM147697	Vitis vinifera 'Cabernet sauvignon' mock inoculateds at 4 h post inoculation	26

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-1	34	1621288_at	CB972014	hypothetical protein LOC100252015	-	2e+0	At5g50030	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select
0.02	3e-1	34	1613097_at	BQ795148	hypothetical protein LOC100241460	-	2e-18	At3g61260	DNA-binding family protein / remorin family protein	C.G.	S.X.	Please select
0.03	1e+0	32	1619671_at	CF204107.1	-	-	2e-15	At5g41760	nucleotide-sugar transporter family protein	C.G.	S.X.	Please select
0.02	1e+0	32	1618738_at	CF372596	hypothetical protein LOC100252524	-	3e-45	At1g30230	elongation factor 1-beta / EF-1-beta	C.G.	S.X.	Please select
0.02	1e+0	32	1616917_at	CB001568	-	-	4e-1	At1g09240	NAS3 (NICOTIANAMINE SYNTHASE 3)	C.G.	S.X.	Please select
0.02	1e+0	32	1615676_a_at	CB346815	hypothetical protein LOC100246113	-	2e+0	At2g16595	-	C.G.	S.X.	Please select
0.02	1e+0	32	1615419_s_at	CB975116	hypothetical protein LOC100244646	-	1e-10	At2g33220	-	C.G.	S.X.	Please select
0.02	1e+0	32	1613070_at	CB001568	hypothetical protein LOC100241511	-	4e-1	At1g09240	NAS3 (NICOTIANAMINE SYNTHASE 3)	C.G.	S.X.	Please select
0.02	1e+0	32	1607131_at	CB346815	hypothetical protein LOC100246113	-	2e+0	At2g16595	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.18	2e-35	149	Arabidopsis thaliana	At5g30510	833138	RPS1 (RIBOSOMAL PROTEIN S1)	F:structural constituent of ribosome, RNA binding;P:translation;C:thylakoid, chloroplast stroma, chloroplast, membrane;BOPMFA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.17	2e-67	256	Glycine max	Gma.9972.1.S1_at	CD400396	-	-	9e-90	At5g30510	RPS1 (RIBOSOMAL PROTEIN S1)	C.G.	S.X.	Please select
0.11	5e-35	147	Hordeum vulgare	Contig428_at	Contig428	-	-	3e-71	At5g30510	RPS1 (RIBOSOMAL PROTEIN S1)	C.G.	S.X.	Please select
0.17	6e-53	208	Oryza sativa	Os03g0315800	AK061971.1	-	30S ribosomal protein S1, chloroplast precursor(CS1)	9e-53	At5g30510	RPS1 (RIBOSOMAL PROTEIN S1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.27	4e-41	169	Populus trichocarpa	Ptp.1122.2.S1_at	CV245983	hypothetical protein	-	2e-70	At5g30510	RPS1 (RIBOSOMAL PROTEIN S1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.11	3e-29	129	Triticum aestivum	Ta.2881.1.S1_a_at	CA624734	-	-	2e-75	At5g30510	RPS1 (RIBOSOMAL PROTEIN S1)	C.G.	S.X.	Please select
0.15	2e-37	155	Zea mays	Zm.5414.1.A1_at	BQ539565	30S ribosomal protein S1	-	7e-69	At5g30510	RPS1 (RIBOSOMAL PROTEIN S1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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