CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1622185_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.59 80.6 1622185_at CF209948 - - 3e-2 At1g78915 binding S.X. H.G.
0.67 87.9 1608829_at CD802477 hypothetical protein LOC100258592 - 9e-24 At4g03415 catalytic/ protein serine/threonine phosphatase S.X. H.G.
0.53 75.2 1613373_at BM437091 hypothetical protein LOC100245626 - 5e-7 At3g25500 AFH1 (FORMIN HOMOLOGY 1) S.X. H.G.
0.50 72.7 1609302_at CB979609 similar to somatic embryogenesis receptor kinase - 7e-14 At1g34210 SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2) S.X. H.G.
0.40 57.7 1609490_s_at CK138152.1 hypothetical protein LOC100267319 - 6e-9 At4g24760 unknown protein S.X. H.G.
0.33 45.7 1614917_at CF372079 hypothetical protein LOC100267340 - 4e+0 At5g60660 PIP2 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.7 96.2 GSM436355 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.3 95.2 GSM436413 V. riparia (VR, PI588259) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.2 94.9 GSM436371 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.1 94.6 GSM436401 V. riparia (VR, PI588259) LD, 15h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.1 94.6 GSM436402 V. riparia (VR, PI588259) LD, 15h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.0 94.2 GSM436354 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.9 93.8 GSM436363 Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.8 93.4 GSM436412 V. riparia (VR, PI588259) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.8 93.4 GSM436399 V. riparia (VR, PI588259) LD, 15h 14 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.8 93.4 GSM436359 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-1 36 1621368_at CB343128 hypothetical protein LOC100247376 - 7e-2 At1g69295 PDCB4 (PLASMODESMATA CALLOSE-BINDING PROTEIN 4) C.G. S.X.
0.02 1e-1 36 1620772_at CF607066 hypothetical protein LOC100252015 - 3e-26 At5g53620 unknown protein C.G. S.X.
0.01 2e+0 32 1621434_at CB005041 hypothetical LOC100252575 - 5e-2 At3g48050 DNA binding / protein binding / transcription regulator C.G. S.X.
0.02 2e+0 32 1611626_at CD716086 - - 3e-1 At5g58230 MSI1 (MULTICOPY SUPRESSOR OF IRA1) C.G. S.X.
0.01 2e+0 32 1608836_at CB005041 - - 5e-2 At3g48050 DNA binding / protein binding / transcription regulator C.G. S.X.
0.02 2e+0 32 1607855_at CD716086 - - 3e-1 At5g58230 MSI1 (MULTICOPY SUPRESSOR OF IRA1) C.G. S.X.
0.01 8e+0 30 1622451_s_at CB982889 S-adenosyl-L-methionine decarboxylase - 8e-4 At5g15950 adenosylmethionine decarboxylase family protein C.G. S.X.
0.02 8e+0 30 1622418_at CF415510 hypothetical protein LOC100244541 - 6e-2 At1g19200 senescence-associated protein-related C.G. S.X.
0.02 8e+0 30 1620482_at CF415268 hypothetical protein LOC100255975 - 1e+0 At1g28510 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-2 40 Arabidopsis thaliana At1g78915 844230 binding F:binding;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;BOAPMF - - - C.G. S.X.
0.04 1e-2 42 Glycine max Gma.2808.2.A1_at CD398604 - - 4e+0 At3g10770 nucleic acid binding C.G. S.X.
0.03 8e-1 34 Hordeum vulgare HV_CEb0011H11r2_x_at HV_CEb0011H11r2 - - 3e+0 At1g34640 unknown protein C.G. S.X.
0.02 8e-1 36 Oryza sativa Os01g0621700 AK108938.1 - Myosin tail 2 domain containing protein 4e-1 At3g45220 serpin, putative / serine protease inhibitor, putative C.G. S.X.
0.03 2e+0 34 Populus trichocarpa Ptp.4835.1.S1_s_at BU812088 hypothetical protein - 2e+0 At3g60220 ATL4 C.G. S.X.
0.03 2e+0 34 Triticum aestivum Ta.25415.1.A1_at CD373891 - - 5e+0 At5g49470 protein kinase family protein C.G. S.X.
0.03 5e-2 38 Zea mays Zm.12398.1.S1_at BE510957 hypothetical protein LOC100275003 - 2e+0 At5g59030 COPT1 (copper transporter 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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