Gene omics information

Query gene ID	1622126_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.95	99.6	1622126_at	CF568916	-	-	7e-8	At4g08230	glycine-rich protein	S.X.	H.G.	Please select
0.48	68.8	1606661_at	CD004606	hypothetical protein LOC100246447	-	2e+0	At5g08050	-	S.X.	H.G.	Please select
0.41	58.7	1609323_at	CF513393	hypothetical protein LOC100258561	-	4e-4	At4g05400	unknown protein	S.X.	H.G.	Please select
0.39	54.9	1619198_at	CB983158	hypothetical protein LOC100257864	-	3e+0	At4g26790	GDSL-motif lipase/hydrolase family protein	S.X.	H.G.	Please select
0.38	53.6	1615632_a_at	CB977610	hypothetical protein LOC100262698	-	3e-13	At3g57870	SCE1 (SUMO CONJUGATION ENZYME 1)	S.X.	H.G.	Please select
0.37	51.7	1619248_at	CA813733	hypothetical protein LOC100264750	-	3e-1	At5g18100	CSD3 (copper/zinc superoxide dismutase 3)	S.X.	H.G.	Please select
0.37	51.7	1613129_at	CB970410	hypothetical protein LOC100266068	-	2e-13	At4g17330	ATG2484-1	S.X.	H.G.	Please select
0.37	51.7	1615991_s_at	CF404409	hypothetical protein LOC100241833	-	1e-22	At4g38130	HD1 (HISTONE DEACETYLASE 1)	S.X.	H.G.	Please select
0.37	51.7	1613489_at	CF403663	-	-	5e+0	At3g25572	CPuORF11 (Conserved peptide upstream open reading frame 11)	S.X.	H.G.	Please select
0.36	50.7	1612818_at	CF414592	hypothetical protein LOC100265822	-	6e-33	At1g51060	HTA10	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.8	96.4	GSM436368	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.5	95.7	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.5	95.7	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.4	95.5	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436381	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436396	V. riparia (VR, PI588259) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436383	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.69	0	880	1610749_at	CB339256	hypothetical protein LOC100250629	-	1e-4	At4g08230	glycine-rich protein	C.G.	S.X.	Please select
0.89	0	825	1622251_s_at	CF201793.1	hypothetical protein LOC100250629	-	5e-3	At4g08230	glycine-rich protein	C.G.	S.X.	Please select
0.89	0	825	1607928_at	CF201793.1	-	-	5e-3	At4g08230	glycine-rich protein	C.G.	S.X.	Please select
0.03	7e-2	36	1610815_at	CD013333	hypothetical protein LOC100267283	-	3e-1	At2g26730	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please select
0.02	3e-1	34	1616302_at	CB912509	ripening-related protein-like	-	4e-11	At5g02230	haloacid dehalogenase-like hydrolase family protein	C.G.	S.X.	Please select
0.04	1e+0	32	1621972_s_at	CF203227.1	hypothetical protein LOC100266414	-	2e-1	Atmg00910	-	C.G.	S.X.	Please select
0.03	1e+0	32	1615558_at	BQ796963	hypothetical protein LOC100266414	-	4e-3	At3g18820	ATRAB7B (ARABIDOPSIS RAB GTPASE HOMOLOG G3F)	C.G.	S.X.	Please select
0.02	5e+0	30	1622785_at	CA808894	hypothetical protein LOC100255423	-	5e-1	At1g68795	CLE12 (CLAVATA3/ESR-RELATED 12)	C.G.	S.X.	Please select
0.02	5e+0	30	1622315_at	CF206112.1	-	-	2e-15	At5g55220	trigger factor type chaperone family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	7e-8	57	Arabidopsis thaliana	At4g08230	826373	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.24	3e-20	99	Glycine max	Gma.5710.1.S1_at	AI442566	-	-	7e-5	At4g08230	glycine-rich protein	C.G.	S.X.	Please select
0.08	2e-3	42	Hordeum vulgare	Contig4804_at	Contig4804	-	-	1e-1	At1g72600	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.14	5e-4	46	Oryza sativa	Os03g0263700	AK071748.1	-	Conserved hypothetical protein	5e+0	At5g06020	self-incompatibility protein-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.41	2e-48	192	Populus trichocarpa	PtpAffx.12741.1.A1_at	CV234093	-	-	8e-2	At4g08230	glycine-rich protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	7e-2	38	Triticum aestivum	TaAffx.113540.1.S1_at	CA609979	-	-	1e+1	At4g10695	unknown protein	C.G.	S.X.	Please select
0.08	1e-4	46	Zea mays	Zm.7704.1.A1_at	BM079575	hypothetical protein LOC100278612	-	5e-3	At1g62240	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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