CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1622077_s_at

Gene name hypothetical protein LOC100249199

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1622077_s_at CF372353 hypothetical protein LOC100249199 - 3e-21 At3g27430 PBB1 S.X. H.G.
0.67 87.9 1614819_at CF513559 hypothetical protein LOC100259847 - 2e-11 At1g71860 PTP1 (PROTEIN TYROSINE PHOSPHATASE 1) S.X. H.G.
0.50 72.7 1611262_at CD013610 hypothetical protein LOC100244343 - 1e+0 At3g24010 ING1 (INHIBITOR OF GROWTH 1) S.X. H.G.
0.36 50.7 1621155_at BQ794745 hypothetical protein LOC100248478 - 8e-34 At2g30260 U2B'' (U2 small nuclear ribonucleoprotein B) S.X. H.G.
0.35 48.5 1617806_at BQ797048 hypothetical protein LOC100249540 - 4e-10 At2g39990 EIF2 S.X. H.G.
0.29 37.7 1619019_at CF213490 hypothetical protein LOC100243336 - 2e-102 At5g67560 ATARLA1D (ADP-ribosylation factor-like A1D) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2.3 90.7 GSM436371 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436346 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436388 V. riparia (VR, PI588259) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
2.1 89.1 GSM436390 V. riparia (VR, PI588259) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436389 V. riparia (VR, PI588259) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM299462 D_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.9 87.2 GSM436368 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
1.9 87.2 GSM436412 V. riparia (VR, PI588259) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
1.9 87.2 GSM436349 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 2e-1 36 1619430_s_at CF213891 hypothetical protein LOC100259138 - 3e-12 At1g77510 ATPDIL1-2 (PDI-LIKE 1-2) C.G. S.X.
0.00 2e-1 36 1614676_s_at BQ793152 ATP synthase subunit a, chloroplastic - 0 Atcg00120 - C.G. S.X.
0.00 2e-1 36 1609916_s_at CD005933 hypothetical protein LOC100266722 - 0 Atcg00120 - C.G. S.X.
0.00 2e-1 36 1608138_s_at CB342671 - - 0 Atcg00120 - C.G. S.X.
0.02 6e-1 34 1618580_at CD721169 - - 1e+0 At5g66005 Expressed protein C.G. S.X.
0.02 6e-1 34 1617754_at CB973158 hypothetical protein LOC100267616 - 3e-17 At5g65640 bHLH093 (beta HLH protein 93) C.G. S.X.
0.02 6e-1 34 1614768_at CD721169 - - 1e+0 At5g66005 Expressed protein C.G. S.X.
0.02 3e+0 32 1615934_at CF214274 - - 2e-1 At5g11740 AGP15 (ARABINOGALACTAN PROTEIN 15) C.G. S.X.
0.02 3e+0 32 1615830_at CA816489 hypothetical protein LOC100247422 - 1e-21 At1g18180 oxidoreductase, acting on the CH-CH group of donors C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.27 3e-21 103 Arabidopsis thaliana At3g27430 822364 PBB1 Encodes 20S proteasome beta subunit PBB1 (PBB1). - - - C.G. S.X.
0.41 1e-88 327 Glycine max Gma.5581.1.S1_at CD392224 - - 8e-53 At3g27430 PBB1 C.G. S.X.
0.27 2e-29 129 Hordeum vulgare Contig3408_at Contig3408 - - 1e-26 At3g27430 PBB1 C.G. S.X.
0.26 3e-38 161 Oryza sativa Os05g0187000 AB026564.1 - 20S proteasome beta2 subunit 1e-23 At5g40580 PBB2 C.G. S.X.
0.51 9e-124 444 Populus trichocarpa Ptp.251.1.S1_at CV235336 hypothetical protein - 6e-78 At5g40580 PBB2 C.G. S.X.
0.25 3e-30 133 Triticum aestivum Ta.14021.1.S1_at BJ221816 - - 6e-26 At3g27430 PBB1 C.G. S.X.
0.36 4e-46 184 Zea mays Zm.6982.1.S1_at AY105052.1 proteasome subunit beta type 7-A - 1e-20 At3g27430 PBB1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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