Gene omics information

Query gene ID	1622069_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1622069_at	CD801772	-	-	2e+0	At1g74340	dolichol phosphate-mannose biosynthesis regulatory protein-related	S.X.	H.G.	Please select
0.27	34.0	1612558_at	CA818826	-	-	7e-2	At4g20280	TAF11 (TBP-ASSOCIATED FACTOR 11)	S.X.	H.G.	Please select
0.07	7.8	1618464_at	CB971707	hypothetical protein LOC100254825	-	2e-11	At1g30130	unknown protein	S.X.	H.G.	Please select
0.06	6.8	1612732_at	CD714809	-	-	2e-25	At1g53400	unknown protein	S.X.	H.G.	Please select
0.03	4.2	1621283_at	AF257777.1	H+-pyrophosphatase	-	1e-93	At1g15690	AVP1	S.X.	H.G.	Please select
0.02	3.2	1616455_s_at	BQ792207	hypothetical protein LOC100250281	-	4e-1	At4g33750	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.0	99.3	GSM147725	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	54
6.5	98.9	GSM147675	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	4
5.3	98.2	GSM436350	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
5.0	98.0	GSM436411	V. riparia (VR, PI588259) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
4.3	97.2	GSM147678	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	7
4.1	96.9	GSM147685	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	14
4.0	96.7	GSM147738	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	67
3.8	96.4	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.7	96.2	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.3	95.2	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	7e-1	32	1611613_at	BQ796771	hypothetical protein LOC100256970	-	3e+0	At4g15630	integral membrane family protein	C.G.	S.X.	Please select
0.05	7e-1	32	1610503_at	CB975128	-	-	4e-1	At5g38310	unknown protein	C.G.	S.X.	Please select
0.04	7e-1	32	1609339_at	CF518412	hypothetical protein LOC100249314	-	5e-12	At4g14900	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.02	3e+0	30	1622564_at	BM437316	hypothetical protein LOC100260573	-	1e-35	At1g58684	40S ribosomal protein S2, putative	C.G.	S.X.	Please select
0.02	3e+0	30	1621440_at	CD004030	-	-	2e+0	At4g15780	ATVAMP724	C.G.	S.X.	Please select
0.04	3e+0	30	1621160_at	CF208890	-	-	2e-1	At5g24250	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	30	1619657_at	CD719074	-	-	1e-1	At1g53650	CID8 (CTC-INTERACTING DOMAIN 8)	C.G.	S.X.	Please select
0.04	3e+0	30	1617695_at	CF514710	-	-	1e+0	At1g28290	AGP31 (arabinogalactan-protein 31)	C.G.	S.X.	Please select
0.03	3e+0	30	1617322_at	BQ796754	-	-	2e+0	At5g66700	HB53	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	2e+0	32	Arabidopsis thaliana	At1g74340	843775	dolichol phosphate-mannose biosynthesis regulatory protein-related	F:molecular_function unknown;P:macromolecule biosynthetic process;C:integral to endoplasmic reticulum membrane, endomembrane system;MFOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	5e-2	38	Glycine max	GmaAffx.28540.1.S1_at	BQ080202	-	-	8e-1	At5g19855	unknown protein	C.G.	S.X.	Please select
0.03	3e-1	34	Hordeum vulgare	Contig6011_at	Contig6011	-	-	4e-7	At3g62790	NADH-ubiquinone oxidoreductase-related	C.G.	S.X.	Please select
0.05	5e+0	32	Oryza sativa	OsAffx.30267.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	8e-1	34	Populus trichocarpa	PtpAffx.217400.1.S1_at	pmrna32648	hypothetical protein	-	6e-7	At5g18890	inosine-uridine preferring nucleoside hydrolase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	2e+0	32	Triticum aestivum	Ta.20841.2.S1_at	CA621322	-	-	2e-1	At1g65680	ATEXPB2 (ARABIDOPSIS THALIANA EXPANSIN B2)	C.G.	S.X.	Please select
0.03	3e-1	34	Zea mays	Zm.9726.1.A1_at	BM332481	-	-	3e-1	At2g18210	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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