CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1622060_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.42 60.1 1622060_at BM436271 - - 3e-32 At5g65780 ATBCAT-5 S.X. H.G.
0.29 37.7 1609933_at BM436747 - - 4e-63 At1g34370 STOP1 (sensitive to proton rhizotoxicity 1) S.X. H.G.
0.21 24.0 1622537_at CB917669 - - 1e-22 At5g44730 haloacid dehalogenase-like hydrolase family protein S.X. H.G.
0.08 8.5 1610127_at CB920325 - - 1e-1 At3g15355 UBC25 (UBIQUITIN-CONJUGATING ENZYME 25) S.X. H.G.
0.06 6.8 1609051_at CA818195 - - 4e-32 At5g47730 SEC14 cytosolic factor, putative / polyphosphoinositide-binding protein, putative S.X. H.G.
0.05 6.0 1620444_at CD715631 - - 1e-29 At5g57190 PSD2 (phosphatidylserine decarboxylase 2) S.X. H.G.
0.04 5.2 1614118_at CD010339 - - 3e-17 At2g14910 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.6 99.8 GSM299452 B_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.5 98.9 GSM299451 B_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.6 97.6 GSM436388 V. riparia (VR, PI588259) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.6 97.6 GSM436391 V. riparia (VR, PI588259) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.5 97.5 GSM436414 V. riparia (VR, PI588259) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
4.3 97.2 GSM436389 V. riparia (VR, PI588259) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
4.1 96.9 GSM436390 V. riparia (VR, PI588259) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.9 96.6 GSM436369 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.9 96.6 GSM436348 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.7 96.2 GSM436411 V. riparia (VR, PI588259) SD, 13h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 1197 1618259_at BM436271 hypothetical LOC100245758 - 3e-32 At5g65780 ATBCAT-5 C.G. S.X.
0.04 1e-4 46 1607792_at CF214419 hypothetical protein LOC100250805 - 1e+0 At1g10717 - C.G. S.X.
0.03 2e+0 32 1620820_at CK138181.1 - - 3e-1 At5g28610 - C.G. S.X.
0.03 2e+0 32 1618368_at CD798797 hypothetical protein LOC100257464 - 4e+0 At5g20970 heat shock family protein C.G. S.X.
0.02 2e+0 32 1615435_a_at CA817608 hypothetical protein LOC100255669 - 7e-3 At5g04910 unknown protein C.G. S.X.
0.02 2e+0 32 1615414_x_at CF206119.1 - - 1e+0 At2g47650 UXS4 (UDP-XYLOSE SYNTHASE 4) C.G. S.X.
0.02 2e+0 32 1614229_at CB837746 - - 5e+0 At3g55665 - C.G. S.X.
0.02 2e+0 32 1613445_at CF606596 hypothetical protein LOC100243659 - 2e-2 At1g53230 TCP3 C.G. S.X.
0.02 2e+0 32 1613131_at CA817608 hypothetical protein LOC100255669 - 7e-3 At5g04910 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.27 3e-32 139 Arabidopsis thaliana At5g65780 836707 ATBCAT-5 encodes a chloroplast branched-chain amino acid aminotransferase, can complement the yeast leu/iso-leu/val auxotrophy mutant - - - C.G. S.X.
0.41 2e-22 107 Glycine max GmaAffx.49521.2.S1_at BF066739 - - 5e-34 At5g65780 ATBCAT-5 C.G. S.X.
0.07 7e-7 54 Hordeum vulgare Contig8040_at Contig8040 - - 6e-11 At3g49680 BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3) C.G. S.X.
0.16 2e-22 107 Oryza sativa Os05g0558400 AK072756.1 - Branched-chain-amino-acid aminotransferase 3,chloroplast precursor (EC 2.6.1.42) (Atbcat-3) 5e-24 At5g65780 ATBCAT-5 C.G. S.X.
0.31 3e-85 315 Populus trichocarpa PtpAffx.41318.1.S1_a_at CV265728 hypothetical protein - 3e-53 At5g65780 ATBCAT-5 C.G. S.X.
0.04 6e-3 42 Triticum aestivum TaAffx.129191.1.S1_at CD906345 - - 3e-5 At1g10070 ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) C.G. S.X.
0.10 1e-11 69 Zea mays Zm.2520.1.A1_at AW400289 hypothetical protein LOC100191754 - 5e-21 At3g49680 BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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