Gene omics information

Query gene ID	1622000_s_at
Gene name	hypothetical protein LOC100242169
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.64	84.7	1622000_s_at	CF604800	hypothetical protein LOC100242169	-	1e+0	At3g27329	-	S.X.	H.G.	Please select
0.80	93.6	1611994_a_at	CF214487	hypothetical protein LOC100260925	-	7e-8	At1g32230	RCD1 (RADICAL-INDUCED CELL DEATH1)	S.X.	H.G.	Please select
0.53	75.2	1619732_at	CF517983	hypothetical protein LOC100267623	-	5e-15	At5g53000	TAP46 (2A phosphatase associated protein of 46 kD)	S.X.	H.G.	Please select
0.43	61.5	1621533_at	CF514195	hypothetical protein LOC100248579	-	5e-45	At4g01810	protein transport protein-related	S.X.	H.G.	Please select
0.40	57.7	1611784_at	CB971421	hypothetical protein LOC100256712	-	2e-37	At3g07300	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	S.X.	H.G.	Please select
0.38	53.6	1617936_at	BQ797736	similar to 26S proteasome subunit RPN5b	-	3e-23	At5g64760	RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B)	S.X.	H.G.	Please select
0.38	53.6	1607136_at	CF605014	hypothetical protein LOC100257366	-	4e-28	At4g38630	RPN10 (REGULATORY PARTICLE NON-ATPASE 10)	S.X.	H.G.	Please select
0.33	45.7	1611078_a_at	CF518728	hypothetical protein LOC100260925	-	1e-7	At1g32230	RCD1 (RADICAL-INDUCED CELL DEATH1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.4	95.5	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.3	95.2	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.2	94.9	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.2	94.9	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.2	94.9	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.2	94.9	GSM287881	Green soft berry B10 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.1	94.6	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.9	93.8	GSM287871	Green hard berry C4 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.7	93.0	GSM287884	Green soft berry C7 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM287895	Pink soft berry B13 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.89	0	910	1622667_at	CF568939	-	-	1e+0	At3g27329	-	C.G.	S.X.	Please select
0.03	1e+0	32	1609463_at	BQ800090	hypothetical protein LOC100267895	-	3e-1	At2g34720	NF-YA4 (NUCLEAR FACTOR Y, SUBUNIT A4)	C.G.	S.X.	Please select
0.02	5e+0	30	1622130_at	CB971449	-	-	7e-43	At1g07420	SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1)	C.G.	S.X.	Please select
0.01	5e+0	30	1621682_s_at	CF404793	pyruvate decarboxylase 1	-	5e-52	At5g54960	PDC2 (pyruvate decarboxylase-2)	C.G.	S.X.	Please select
0.04	5e+0	30	1621118_s_at	CD801405	hypothetical protein LOC100247365	-	9e+0	At2g27080	harpin-induced protein-related / HIN1-related / harpin-responsive protein-related	C.G.	S.X.	Please select
0.03	5e+0	30	1620936_at	CF213485	hypothetical protein LOC100260333	-	2e-2	At1g62510	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.03	5e+0	30	1615203_at	CA818658	hypothetical protein LOC100258284	-	7e-2	At5g57060	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	30	1615129_at	CF518930	hypothetical protein LOC100256954	-	3e-11	At5g58240	bis(5'-adenosyl)-triphosphatase, putative	C.G.	S.X.	Please select
0.02	5e+0	30	1614081_at	CF209958	hypothetical protein LOC100256660	-	1e-16	At4g26550	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+0	34	Arabidopsis thaliana	At3g27329	6240733	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.1319.1.S1_at	BI970669	-	-	1e+0	At5g26692	-	C.G.	S.X.	Please select
0.04	2e+0	32	Hordeum vulgare	HD13C19r_at	HD13C19r	-	-	8e+0	At5g48905	LCR12 (Low-molecular-weight cysteine-rich 12)	C.G.	S.X.	Please select
0.03	1e-1	38	Oryza sativa	Os07g0147700	9635.m00474	-	ATPase, BadF/BadG/BcrA/BcrD type domaincontaining protein	3e-12	At1g30540	ATPase, BadF/BadG/BcrA/BcrD-type family	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.13	7e-9	61	Populus trichocarpa	PtpAffx.135416.1.S1_s_at	CN517682	hypothetical protein	-	6e-2	At5g50650	WD-40 repeat family protein / St12p protein, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	2e-2	40	Triticum aestivum	TaAffx.79727.1.S1_at	CA709701	-	-	2e-5	At1g07310	C2 domain-containing protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	Zm.9617.1.A1_at	BM337585	-	-	5e+0	At4g26670	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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