CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1621997_s_at

Gene name hypothetical protein LOC100259237

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 92.3 1621997_s_at CF512249 hypothetical protein LOC100259237 - 2e-1 At1g14200 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.18 19.4 1609527_at CD802146 hypothetical protein LOC100246030 /// hypothetical protein LOC100257953 - 1e+0 At5g55080 AtRAN4 (Ras-related nuclear protein 4) S.X. H.G.
0.12 12.1 1613012_at CD003909 hypothetical protein LOC100242323 - 9e-15 At5g24010 protein kinase family protein S.X. H.G.
0.11 11.3 1606534_at CF516519 hypothetical protein LOC100261660 - 1e+0 At5g02420 unknown protein S.X. H.G.
0.08 8.5 1619842_s_at BQ793715 hypothetical protein LOC100244132 - 1e+0 At5g08220 unknown protein S.X. H.G.
0.04 5.2 1610277_at CF208016 hypothetical protein LOC100257821 - 2e-1 At1g17710 phosphatase S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.7 98.5 GSM436348 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
5.4 98.3 GSM436346 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.1 96.9 GSM147734 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 63
4.1 96.9 GSM436347 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.9 96.6 GSM147737 Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation 66
3.5 95.7 GSM147735 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 64
3.2 94.9 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51
3.2 94.9 GSM436361 Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.1 94.6 GSM147732 Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation 61
3.1 94.6 GSM436350 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e-3 40 1620428_at CF609232 hypothetical protein LOC100254145 - 3e-42 At1g50380 prolyl oligopeptidase family protein C.G. S.X.
0.04 6e-2 36 1611363_at CB969469 hypothetical protein LOC100248617 - 1e-18 At2g21370 xylulose kinase, putative C.G. S.X.
0.04 3e-1 34 1606724_at CF215838 hypothetical protein LOC100247480 - 4e-9 At1g25530 lysine and histidine specific transporter, putative C.G. S.X.
0.02 1e+0 32 1622264_a_at BQ798955 hypothetical protein LOC100247178 - 3e-5 At5g56170 - C.G. S.X.
0.02 1e+0 32 1622020_s_at BQ794212 hypothetical protein LOC100261607 - 1e-8 At4g20260 DREPP plasma membrane polypeptide family protein C.G. S.X.
0.02 1e+0 32 1619172_at CD799360 hypothetical protein LOC100264449 - 1e-85 At1g50380 prolyl oligopeptidase family protein C.G. S.X.
0.03 1e+0 32 1615353_at CB973179 - - 4e-12 At4g04614 unknown protein C.G. S.X.
0.02 1e+0 32 1611011_at CB977487 hypothetical protein LOC100252286 - 3e-43 At2g17720 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
0.01 1e+0 32 1609010_at CB346849 hypothetical protein LOC100266654 - 4e-34 At5g48570 peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-1 36 Arabidopsis thaliana At1g14200 837980 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB - - - C.G. S.X.
0.05 1e-3 44 Glycine max GmaAffx.43275.1.S1_at AI440585 - - 1e+0 At2g24480 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.04 2e+0 32 Hordeum vulgare EBro08_SQ007_H23_at EBro08_SQ007_H23 - - 8e-1 At1g02450 NIMIN1 (NIM1-INTERACTING 1) C.G. S.X.
0.05 2e+0 34 Oryza sativa OsAffx.10237.1.S1_at - - - 0 C.G. S.X.
0.05 3e-1 36 Populus trichocarpa Ptp.1919.1.A1_at CK092679 - - 4e-2 At5g40180 unknown protein C.G. S.X.
0.05 9e-1 34 Triticum aestivum TaAffx.57711.1.S1_at CA625731 - - 4e+0 At4g34050 caffeoyl-CoA 3-O-methyltransferase, putative C.G. S.X.
0.04 4e-1 34 Zea mays Zm.2147.2.A1_at BM341580 - - 1e+0 At5g17210 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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