CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1621965_s_at

Gene name hypothetical protein LOC100247098

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.57 79.8 1621965_s_at BQ793756 hypothetical protein LOC100247098 - 8e-36 At5g23540 26S proteasome regulatory subunit, putative S.X. H.G.
0.67 87.9 1614904_at CF372909 hypothetical protein LOC100250638 - 4e-16 At3g61140 FUS6 (FUSCA 6) S.X. H.G.
0.67 87.9 1619907_at BQ793230 similar to 26S proteasome subunit RPN5b - 3e-26 At5g64760 RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B) S.X. H.G.
0.61 83.2 1612977_at CF204464.1 hypothetical protein LOC100266745 - 5e-53 At3g60250 CKB3 S.X. H.G.
0.46 66.5 1618002_s_at CB340753 hypothetical protein LOC100260795 - 3e-48 At2g27030 CAM5 (CALMODULIN 5) S.X. H.G.
0.45 64.6 1615911_at CF512086 hypothetical protein LOC100243469 - 2e-66 At3g57290 EIF3E (EUKARYOTIC TRANSLATION INITIATION FACTOR 3E) S.X. H.G.
0.44 64.1 1608865_at CF514121 hypothetical protein LOC100259987 - 7e-90 At5g38480 GRF3 (GENERAL REGULATORY FACTOR 3) S.X. H.G.
0.32 43.1 1610278_s_at CA817273 hypothetical protein LOC100259495 - 5e-38 At4g33250 EIF3K (EUKARYOTIC TRANSLATION INITIATION FACTOR 3K) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2.8 93.4 GSM436389 V. riparia (VR, PI588259) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM436403 V. riparia (VR, PI588259) LD, 15h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM436363 Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM436354 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436360 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436401 V. riparia (VR, PI588259) LD, 15h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436388 V. riparia (VR, PI588259) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436419 V. riparia (VR, PI588259) SD, 13h 14 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436379 Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436381 Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.97 0 1045 1607642_at BQ793756 hypothetical protein LOC100247098 - 8e-36 At5g23540 26S proteasome regulatory subunit, putative C.G. S.X.
0.64 0 735 1617506_at CF206130.1 - - 7e-89 At5g23540 26S proteasome regulatory subunit, putative C.G. S.X.
0.05 2e-12 71 1609978_at CA813834 hypothetical protein LOC100247098 - 4e-143 At5g23540 26S proteasome regulatory subunit, putative C.G. S.X.
0.02 2e+0 32 1621946_at CB975415 hypothetical protein LOC100249181 - 4e-19 At1g73590 PIN1 (PIN-FORMED 1) C.G. S.X.
0.03 2e+0 32 1621021_at CF208345 hypothetical protein LOC100249161 - 2e-1 At5g56610 dual specificity protein phosphatase family protein C.G. S.X.
0.02 2e+0 32 1614994_at CB970828 hypothetical protein LOC100260207 - 2e-3 At2g04570 GDSL-motif lipase/hydrolase family protein C.G. S.X.
0.02 2e+0 32 1609913_at CF511104 hypothetical protein LOC100265684 - 3e-2 At3g17190 unknown protein C.G. S.X.
0.03 2e+0 32 1607500_at CB972788 hypothetical protein LOC100262903 - 3e-23 At2g23350 PAB4 (POLY(A) BINDING PROTEIN 4) C.G. S.X.
0.01 6e+0 30 1622296_at CF514744 hypothetical protein LOC100254083 - 3e-9 At4g34588 CPuORF2 (Conserved peptide upstream open reading frame 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.29 8e-36 151 Arabidopsis thaliana At5g23540 832420 26S proteasome regulatory subunit, putative F:unknown;P:response to salt stress, protein catabolic process, ubiquitin-dependent protein catabolic process;C:nucleus, proteasome regulatory particle, lid subcomplex;MFPO - - - C.G. S.X.
0.24 2e-28 127 Glycine max Gma.10966.1.S1_at CD396963 - - 8e-130 At5g23540 26S proteasome regulatory subunit, putative C.G. S.X.
0.24 1e-23 109 Hordeum vulgare Contig3417_at Contig3417 - - 7e-87 At5g23540 26S proteasome regulatory subunit, putative C.G. S.X.
0.26 2e-41 171 Oryza sativa Os05g0371200 AK109403.2 - 26S proteasome non-ATPase regulatory subunit 14(26S proteasome regulatory subunit rpn11) 6e-41 At5g23540 26S proteasome regulatory subunit, putative C.G. S.X.
0.35 2e-61 236 Populus trichocarpa PtpAffx.46043.1.S1_s_at CK096749 hypothetical protein - 2e-64 At5g23540 26S proteasome regulatory subunit, putative C.G. S.X.
0.23 2e-15 83 Triticum aestivum TaAffx.118712.1.S1_at CD914698 - - 3e-64 At5g23540 26S proteasome regulatory subunit, putative C.G. S.X.
0.20 1e-20 99 Zea mays Zm.4184.1.A1_at CA404216 26S proteasome non-ATPase regulatory subunit 14 - 7e-38 At5g23540 26S proteasome regulatory subunit, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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