CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1621932_at

Gene name hypothetical protein LOC100256114

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 72.7 1621932_at CA808137 hypothetical protein LOC100256114 - 4e-3 At2g34690 ACD11 (ACCELERATED CELL DEATH 11) S.X. H.G.
0.44 64.1 1621308_at CA809074 hypothetical protein LOC100256114 - 4e+0 At5g24040 F-box family protein S.X. H.G.
0.43 61.5 1621521_at CF518960 hypothetical protein LOC100245475 /// hypothetical protein LOC100252913 /// hypothetical protein LOC100253882 - 4e+0 At4g14110 COP9 (CONSTITUTIVE PHOTOMORPHOGENIC 9) S.X. H.G.
0.20 22.4 1610959_at CD720524 hypothetical protein LOC100263719 - 4e-7 At2g45830 DTA2 (DOWNSTREAM TARGET OF AGL15 2) S.X. H.G.
0.12 12.1 1607344_at CF516466 - - 7e+0 At5g15610 proteasome family protein S.X. H.G.
0.08 8.5 1619099_at CB974179 hypothetical protein LOC100258691 - 2e+0 At3g19980 ATFYPP3 (FLOWER-SPECIFIC, PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
19.0 99.9 GSM322368 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
15.9 99.9 GSM322363 genotype: Chardonnay - disease type: Bois Noir infected - rep3 GSE12842 Gene expression in grapevine in response to Bois noir infection
11.4 99.7 GSM322362 genotype: Chardonnay - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
11.0 99.7 GSM322370 genotype: Incrocio Manzoni - disease type: Healthy - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
10.2 99.6 GSM322366 genotype: Chardonnay - disease type: Healthy - rep3 GSE12842 Gene expression in grapevine in response to Bois noir infection
9.6 99.6 GSM322361 genotype: Chardonnay - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
6.4 98.9 GSM436414 V. riparia (VR, PI588259) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
4.1 96.9 GSM147683 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation 12
3.5 95.7 GSM322369 genotype: Incrocio Manzoni - disease type: Healthy - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
3.4 95.5 GSM299457 C_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 5e-3 40 1621308_at CA809074 hypothetical protein LOC100256114 - 4e+0 At5g24040 F-box family protein C.G. S.X.
0.03 1e+0 32 1621431_at CF205258.1 Peroxidase 4 - 6e-3 At5g05340 peroxidase, putative C.G. S.X.
0.02 1e+0 32 1617552_at CF202269.1 hypothetical protein LOC100243817 - 4e-35 At4g35020 ARAC3 (ARABIDOPSIS RAC-LIKE 3) C.G. S.X.
0.02 1e+0 32 1614409_at CA817387 hypothetical protein LOC100266036 - 1e-72 At3g61470 LHCA2 C.G. S.X.
0.02 5e+0 30 1618457_at CF205125.1 - - 1e-4 At1g07250 UGT71C4 (UDP-GLUCOSYL TRANSFERASE 71C4) C.G. S.X.
0.03 5e+0 30 1616778_at BQ800229 hypothetical protein LOC100268099 - 4e-3 At3g53570 AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1) C.G. S.X.
0.03 5e+0 30 1615866_at CD011300 - - 2e-2 At4g09840 unknown protein C.G. S.X.
0.03 5e+0 30 1613709_at CD797642 - - 3e+0 At4g01915 unknown protein C.G. S.X.
0.02 5e+0 30 1613326_at CF204234.1 - - 2e+0 At3g56420 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 4e-3 42 Arabidopsis thaliana At2g34690 818034 ACD11 (ACCELERATED CELL DEATH 11) Gene product transports the glycolipid precursor sphingosine between membranes in vitro. Mutant constitutively expresses defense-related genes that accompany the hypersensitive response normally triggered by avirulent pathogens. - - - C.G. S.X.
0.07 6e-3 42 Glycine max Gma.6474.3.A1_a_at CA800174 - - 5e-2 At2g28700 AGL46 (AGAMOUS-LIKE 46) C.G. S.X.
0.04 2e+0 32 Hordeum vulgare Contig7746_s_at Contig7746 - - 2e+0 At5g48950 thioesterase family protein C.G. S.X.
0.08 8e-3 42 Oryza sativa Os03g0710700 9631.m04910 - Conserved hypothetical protein 2e+0 At3g22300 RPS10 (RIBOSOMAL PROTEIN S10) C.G. S.X.
0.20 9e-36 151 Populus trichocarpa PtpAffx.26534.1.S1_at CK095200 hypothetical protein - 6e-10 At4g39670 glycolipid binding / glycolipid transporter C.G. S.X.
0.05 4e+0 32 Triticum aestivum TaAffx.97401.1.S1_at AJ610176 - - 5e+0 At5g20180 ribosomal protein L36 family protein C.G. S.X.
0.10 2e-6 52 Zea mays Zm.18228.1.S1_at AY107769.1 hypothetical protein LOC100275982 - 5e-10 At2g34690 ACD11 (ACCELERATED CELL DEATH 11) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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