CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1621905_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1621905_at CF414354 - - 4e-1 At3g11630 2-cys peroxiredoxin, chloroplast (BAS1) S.X. H.G.
0.50 72.7 1612656_at CB971335 hypothetical protein LOC100264368 /// hypothetical protein LOC100263692 /// hypothetical LOC100244853 /// hypothetical LOC100245039 /// hypothetical LOC100258542 /// hypothetical LOC100261997 /// hypothetical LOC100267352 - 1e-66 At2g44120 60S ribosomal protein L7 (RPL7C) S.X. H.G.
0.40 57.7 1615032_s_at CF202631.1 hypothetical protein LOC100260505 - 4e-5 At2g20490 NOP10 S.X. H.G.
0.24 28.7 1608788_at CF414358 hypothetical protein LOC100244969 - 2e-5 At5g65250 unknown protein S.X. H.G.
0.19 20.9 1607687_s_at BQ792489 hypothetical protein LOC100241478 - 3e-42 At5g26667 PYR6 S.X. H.G.
0.19 20.9 1608128_at CB342130 hypothetical protein LOC100263010 - 5e-47 At5g09510 40S ribosomal protein S15 (RPS15D) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.1 96.9 GSM147726 Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation 55
3.8 96.4 GSM147720 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 49
3.8 96.4 GSM147721 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 50
3.7 96.2 GSM147740 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 69
3.6 96.0 GSM147728 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 57
3.1 94.6 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51
2.7 93.0 GSM147712 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation 41
2.4 91.3 GSM147739 Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation 68
2.3 90.7 GSM147723 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 52
2.3 90.7 GSM147738 Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation 67
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 9e-6 50 1618426_at CF511929 - - 1e-6 At5g63150 unknown protein C.G. S.X.
0.02 5e-1 34 1618356_a_at CD800731 hypothetical protein LOC100266630 /// hypothetical protein LOC100267614 - 6e-9 At3g10330 transcription initiation factor IIB-2 / general transcription factor TFIIB-2 (TFIIB2) C.G. S.X.
0.02 5e-1 34 1615100_at CD800731 - - 6e-9 At3g10330 transcription initiation factor IIB-2 / general transcription factor TFIIB-2 (TFIIB2) C.G. S.X.
0.02 5e-1 34 1614445_at BQ796553 hypothetical protein LOC100250076 - 3e-36 At1g63970 ISPF C.G. S.X.
0.03 2e+0 32 1622709_s_at CB339838 hypothetical protein LOC100263191 - 9e-57 At5g59690 histone H4 C.G. S.X.
0.01 2e+0 32 1617711_s_at CB974291 hypothetical protein LOC100267235 - 3e-27 At3g56090 ATFER3 (ferritin 3) C.G. S.X.
0.02 2e+0 32 1616064_at CF205270.1 - - 1e-4 At3g47540 chitinase, putative C.G. S.X.
0.01 2e+0 32 1613461_s_at AF532966.1 class IV chitinase - 2e+0 At2g43590 chitinase, putative C.G. S.X.
0.02 2e+0 32 1612039_at BQ799884 hypothetical protein LOC100266651 - 1e-18 At2g03870 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e-1 36 Arabidopsis thaliana At3g11630 820335 2-cys peroxiredoxin, chloroplast (BAS1) Encodes a 2-Cys peroxiredoxin (2-Cys PrxA) that contains two catalytic Cys residues. - - - C.G. S.X.
0.04 2e-1 38 Glycine max GmaAffx.22471.1.S1_at CD410644 - - 1e-12 At5g63150 unknown protein C.G. S.X.
0.03 9e-1 34 Hordeum vulgare EBro08_SQ012_D22_at EBro08_SQ012_D22 - - 3e+0 At5g54110 ATMAMI (ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED MANNITOL-INDUCED) C.G. S.X.
0.02 2e-1 38 Oryza sativa Os.55277.1.S1_at - - - 0 C.G. S.X.
0.03 3e+0 34 Populus trichocarpa PtpAffx.214230.1.S1_at pmrna27688 hypothetical protein - 9e-1 At5g43460 lesion inducing protein-related C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.55060.1.S1_s_at CA672434 - - 3e+0 At3g54200 - C.G. S.X.
0.05 2e-1 36 Zea mays Zm.9584.1.A1_at BM339549 hypothetical protein LOC100276344 - 9e-2 At5g63150 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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