CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1621861_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.55 77.3 1621861_at CF209183 - - 5e-15 At5g55700 BAM4 (BETA-AMYLASE 4) S.X. H.G.
0.46 66.5 1618394_at CF371644 hypothetical protein LOC100253892 - 3e+0 At1g01620 PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C) S.X. H.G.
0.46 66.5 1609275_at CB980261 - - 1e+0 At5g64830 programmed cell death 2 C-terminal domain-containing protein S.X. H.G.
0.33 45.7 1606865_at CF211622 hypothetical protein LOC100244935 - 4e-20 At4g12620 ORC1B (ORIGIN OF REPLICATION COMPLEX 1B) S.X. H.G.
0.33 45.7 1622448_at CF404932 hypothetical protein LOC100252610 - 4e+0 At5g60670 60S ribosomal protein L12 (RPL12C) S.X. H.G.
0.32 43.1 1615461_at CF511810 hypothetical protein LOC100266854 - 6e-3 At1g62260 pentatricopeptide (PPR) repeat-containing protein S.X. H.G.
0.31 41.3 1620774_at CB339523 - - 1e+0 At4g29280 LCR22 (Low-molecular-weight cysteine-rich 22) S.X. H.G.
0.22 25.6 1607989_at CB975639 hypothetical protein LOC100262596 - 2e-1 At1g76700 DNAJ heat shock N-terminal domain-containing protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.4 98.3 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
5.0 98.0 GSM147729 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 58
4.6 97.6 GSM147735 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 64
3.8 96.4 GSM147711 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 40
3.8 96.4 GSM436380 Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.6 96.0 GSM436355 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.5 95.7 GSM147728 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 57
3.5 95.7 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51
3.4 95.5 GSM147740 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 69
3.4 95.5 GSM287886 Green soft berry C22 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 5e-9 59 1616107_s_at CB340793 hypothetical protein LOC100247246 - 5e-51 At4g17090 CT-BMY (CHLOROPLAST BETA-AMYLASE) C.G. S.X.
0.02 5e-3 40 1610646_s_at CA813636 hypothetical protein LOC100242636 - 2e-57 At3g23920 BAM1 (BETA-AMYLASE 1) C.G. S.X.
0.03 7e-2 36 1622315_at CF206112.1 - - 2e-15 At5g55220 trigger factor type chaperone family protein C.G. S.X.
0.03 7e-2 36 1617061_s_at CD003896 hypothetical protein LOC100243475 - 2e-15 At5g55220 trigger factor type chaperone family protein C.G. S.X.
0.03 7e-2 36 1613362_at CB339870 hypothetical protein LOC100242250 - 5e-3 At5g14710 - C.G. S.X.
0.04 3e-1 34 1621897_x_at CF200896.1 - - 2e+0 At2g43060 transcription factor C.G. S.X.
0.04 3e-1 34 1621287_at CF200896.1 - - 2e+0 At2g43060 transcription factor C.G. S.X.
0.03 3e-1 34 1617325_at CB976208 - - 1e-6 At5g45430 protein kinase, putative C.G. S.X.
0.04 3e-1 34 1616802_s_at CF200896.1 - - 2e+0 At2g43060 transcription factor C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 5e-15 81 Arabidopsis thaliana At5g55700 835664 BAM4 (BETA-AMYLASE 4) In vitro assay indicates no beta-amylase activity of BAM4. However mutation in BAM4 impairs starch breakdown. BAM4 may play a regulatory role. - - - C.G. S.X.
0.05 9e-2 38 Glycine max GmaAffx.29770.1.S1_at BM144004 - - 3e+0 At1g50170 ATSIRB (ARABIDOPSIS THALIANA SIROHYDROCHLORIN FERROCHELATASE B) C.G. S.X.
0.04 2e+0 32 Hordeum vulgare HVSMEg0010H05f_at HVSMEg0010H05f - - 4e-1 At1g04770 male sterility MS5 family protein C.G. S.X.
0.03 1e-1 38 Oryza sativa Os07g0113200 AK108787.1 - Conserved hypothetical protein 2e+0 At3g51632 CPuORF44 (Conserved peptide upstream open reading frame 44) C.G. S.X.
0.05 1e-3 44 Populus trichocarpa PtpAffx.154303.1.S1_s_at CX179495 hypothetical protein - 5e-29 At4g17090 CT-BMY (CHLOROPLAST BETA-AMYLASE) C.G. S.X.
0.04 1e+0 34 Triticum aestivum TaAffx.6358.1.S1_at CA687432 - - 2e-1 At5g36000 unknown protein C.G. S.X.
0.03 7e+0 30 Zea mays Zm.1402.1.S1_at BF729248 - - 4e+0 At1g29040 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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